Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq1881 219 3e-51 seq17588 163 2e-34 seq3881 138 9e-27 seq13417 102 7e-16 >seq1881 Length=198091 Score = 219 bits (242), Expect = 3e-51 Identities = 375/538 (70%), Gaps = 16/538 (3%) Strand=Plus/Plus Query 549998 GGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCAAAATGGTAAAGTTGAA 550057 || || ||| | || ||||| || |||||| ||||| | || | || ||||| ||| Sbjct 78966 GGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGGAA 79025 Query 550058 ATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGTTTCTTTCACGGAAACT 550117 || |||||||||||||| || ||| |||| || ||| ||||||| | || || || || Sbjct 79026 ATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTTGCCTTTACTGATACC 79085 Query 550118 GAACATTTAGTTGGTGATGCAGCAAAATATCAAG--CCACTGGTAATCCTACCAATACTA 550175 ||| || | |||||||| ||||| | |||| || || || || || || || Sbjct 79086 GAATGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATG--AACCCCACTAACACGG 79143 Query 550176 TTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTCGACTGTTCAGGCAGATA 550235 |||||||||| || ||| | || ||| | || ||| ||||| | ||| || |||||| Sbjct 79144 TTTTTGATGCCAAGCGTCTTATAGGACGTAGATTTGATGATGCTGTTGTCCAATCAGATA 79203 Query 550236 TGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACCTTATATTGAAG----CT 550291 ||||||||||||| ||| | || |||| | | || | || | | ||| | Sbjct 79204 TGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTGGAAT 79263 Query 550292 ACTCATGAAGGATCTGTTAAACAATTT-TCACCAGAACAAATTTCATCTATGGTTTTAAT 550350 || |||| | ||| | ||| | ||||| | | |||||||||||||| | Sbjct 79264 AC-----AAGGGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCATCTATGGTTTTGAC 79318 Query 550351 GAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGA-AGTTACGGATGCAGTAATAA 550409 |||||||| ||| || |||| | | || |||| ||||| |||| || | | Sbjct 79319 AAAAATGAAGGAAATTGCAGAAGCTTATCTAGG-GAAGACTGTTACCAATGCTGTTGTCA 79377 Query 550410 CTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTG 550469 ||||||| || ||||| |||||||| || | ||| || || |||||||||||| ||||| Sbjct 79378 CTGTACCTGCTTATTTCAATGACTCTCAGCATCAGGCAACCAAAGATGCTGGAACTATTG 79437 Query 550470 CTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGG 550527 |||| || ||||| || | || |||||||| || ||||||||||| ||| ||||| Sbjct 79438 CTGGTCTCAATGTACTCAGGATCATCAATGAGCCAACTGCTGCTGCTACTGCTTATGG 79495 Score = 174 bits (192), Expect = 1e-37 Identities = 433/652 (66%), Gaps = 8/652 (1%) Strand=Plus/Plus Query 551951 TACTCAAACCACTATTGAAGTAGATTCATTATTTGAGGGAATTGATTATAATACGCCTAT 552010 ||| || ||| |||||| | || ||| | | ||| |||||||||| |||| | || Sbjct 79766 TACCCAGGCCAGTATTGAGATTGACTCACTCTATGAAGGAATTGATTTCTATACCTCCAT 79825 Query 552011 TTCGAGGGCCAAATTTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCAGT 552070 | | | |||| |||||||| | | |||| || || | || | || || || Sbjct 79826 TACCCGTGCCAGGTTTGAAGAACTCAATGCTGACCTATTCTGTGGCACCCTGGATCCCGT 79885 Query 552071 AGAACAAGTTTTAAGAGATTCAAAGATTGATAAATCCAAAGTACATGAAATTGTGCTTGT 552130 ||| ||| | ||| | ||| | || || ||| | | ||||| ||||| || || Sbjct 79886 AGAGAAAGCCCTGCAGGATGCTAAGCTAGACAAGTCCCAGATCCATGATATTGTCCTAGT 79945 Query 552131 TGGTGGATCTACAAGAATTCCTAAAATTCGCGAAA--TGTTAAGTTCTTATTTCAATGGT 552188 ||||| ||||| |||| || || |||| |||| | | || ||| || |||||| Sbjct 79946 AGGTGGTTCTACCCGAATCCCCAAGATTCA-GAAACTTCTGCAGGACTTCTT-CAATGGA 80003 Query 552189 AAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAA 552248 ||| || | ||| | || | || || |||||||||||||| |||||||| || | || Sbjct 80004 AAAGAACTGAATAAGAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAG 80063 Query 552249 GCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTT 552308 ||||| ||||| |||||| | | |||||| | ||| || | | || ||||||| Sbjct 80064 GCAGCCATTCTGTCTGGAGACAAATCTGAAAATGTTCAAGATTTGCTGCTGTTAGATGTC 80123 Query 552309 ACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGA 552368 |||||||| || |||||| | ||||| | ||| || | ||||| || ||| | | Sbjct 80124 ACTCCTCTTTCCCTTGGTATTGAAACTGCTGGTGGGGTCATGACAGTCCTCATCAAGCGC 80183 Query 552369 AATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACT 552428 ||||| || |||||| || | | | || |||| || || || || || || Sbjct 80184 AATACAACCATTCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCT 80243 Query 552429 GCTGTTACAATTCAAATTTTTGAAG--GAGAAAGAAAATTCACTAAAGATAATAATCAAC 552486 | ||| ||||| ||| ||||| ||| | | | | || | ||||| || | | Sbjct 80244 GGTGTGCTCATTCAGGTTTATGAAGGTGAGCATGCCA--TGACCAGGGATAACAACCTGC 80301 Query 552487 TTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAG 552546 |||| | || | | ||| || || | ||| || ||||| || || || ||||||| Sbjct 80302 TTGGCAAGTTCGAACTCACAGGCATACCACTTGCCCCCCGTGGTGTTCCTCAGATTGAAG 80361 Query 552547 TTACTTTCGATATCGATGCCAATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 | ||||| || | ||||||||||| || | ||||| ||||| |||||| Sbjct 80362 TCACTTTTGACACTGATGCCAATGGCATCCTCAATGTCTCTGCTGTTGATAA 80413 >seq17588 Length=70272 Score = 163 bits (180), Expect = 2e-34 Identities = 272/390 (70%), Gaps = 16/390 (4%) Strand=Plus/Minus Query 552202 AAAGTGTTAATCCAGATGAGGCTGTTGCCTATGGTGCCGCAATTCAAGCAGCTATTCTTT 552261 || ||||||| |||||||||| ||||| | ||||| || | |||| ||| || | Sbjct 32102 AAGGTGTTAACCCAGATGAGGTAGTTGCTTTAGGTGCTGCTGTACAAGGTGCTGTTTT-- 32045 Query 552262 CTGGACAAACTGATGAAAAACTACAAAATATTGTACTTGTAGATGTTACTCCTCTATCTC 552321 |||||| |||| || || | |||| || ||||||| |||||||| || Sbjct 32044 -------AACTGACGAAAT--TA-AAGGTGTTGTTCTATTAGATGTAACTCCTCTTTCAT 31995 Query 552322 TTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATCGATAGAAATACTACTATTC 552381 | ||| | || ||| | || ||| | |||||||| ||||| ||| || |||||||||| Sbjct 31994 TAGGTATTGAGACACTAGGTGGTGTAATGACTAAACTTATTGATGCTAACACTACTATTC 31935 Query 552382 CTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAATCAAACTGCTGTTACAATTC 552441 ||||||| ||| || || || || ||||||| ||||| | || ||||||| Sbjct 31934 CTTGTAAGAAAGCTGAAACTTTCTCAACAGCGGCAGATAACCAAACAGAGGTAACAATTC 31875 Query 552442 AAATTTTTGAAGGAGAAAGAAAATTCACTAAAGATAATAATCAACT--TGGTACTTTTAA 552499 | | || |||| |||||| | | | || | ||||| |||| ||||| ||| || Sbjct 31874 ATGTGCTTCAAGGTGAAAGACCAATGGCCAACCAAAATAA--AACTATTGGTAATTTCAA 31817 Query 552500 TTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATAT 552559 || ||||||| ||||||| | ||||| | || ||||||||||| | ||| ||||| Sbjct 31816 CCTAACAGGTATTGCTCCTGCACAGCGTGGTATTCCTCAAATTGAAGTAAGTTTTGATAT 31757 Query 552560 CGATGCCAATGGAATTTTGAATGTGACTGC 552589 ||||| || || || |||| ||| |||| Sbjct 31756 TGATGCTAACGGTATCTTGAGTGTTTCTGC 31727 Score = 136 bits (150), Expect = 3e-26 Identities = 172/232 (74%), Gaps = 7/232 (3%) Strand=Plus/Minus Query 550322 CCAGAACAAATTTCATCTATGGT--TTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 ||| || || |||| | ||||| || || |||||||| ||||| || | | | Sbjct 32847 CCACAAGAACTTTCTGCAATGGTACTTCAA--AAAATGAAGCAAACTGCAGAAGACTATT 32790 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | || |||||||| || || || ||||| || || || |||||||| |||||||||| Sbjct 32789 TAGGACAAGAAGTAACAGAGGCTGTAATTACAGTTCCTGCATATTTCTCAGACTCACAAC 32730 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||||||||| ||||| ||||| | ||||| || ||| | || |||||||| || | Sbjct 32729 GTCAAGCTACAAAAGAGGCTGGTCAAATTGCAGGTCTTGAGGTGAAACGTATTATTAACG 32670 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAACATAATGATCAAGA 550551 |||||||||||||||| ||||| || || ||| ||| || | |||||||| Sbjct 32669 AACCTACTGCTGCTGCTCTTGCTTACGGTGTTG--AAAAATCA-GATCAAGA 32621 >seq3881 Length=138185 Score = 138 bits (152), Expect = 9e-27 Identities = 375/562 (67%), Gaps = 23/562 (4%) Strand=Plus/Plus Query 549982 AAACAAAGTAGCTATAGGTATAGATTTAGGAACCACATATAGTTGTGTTGGTGTTTGGCA 550041 ||| ||| | |||||||| || || | || ||||| || || || || || | || Sbjct 63507 AAAGAAA-TGGCTATAGGCATCGACCTGGGTACCACCTACTCATGCGTGGGGGTGTTCCA 63565 Query 550042 AAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAACTACTCCATCTTATGT 550101 ||| || || || || || ||||||||||| || || ||| | || || || || | Sbjct 63566 AAACGGCAAGGTGGAGATCATTGCCAATGACCAGGGCAACTGCACCACCCCCAGCTACAT 63625 Query 550102 TTCTTTCACGGAAACTGAACATTTAGTTGGTGATGCAGCAAAATATCA---AGCCACTGG 550158 | ||||| | ||||| | | | || || || || || | || ||||| || Sbjct 63626 GGCGTTCACCAACACTGAGCGGCTGATCGGGGAAGCGGCCAAGAACCAGGTAGCCA-TG- 63683 Query 550159 TAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAAGAAGTTTTAATGATTC 550218 ||||| || ||| | |||||||| |||||| | || || || | ||||||||| | Sbjct 63684 -AATCCCCAGAACACTGTCTTTGATGCCAAACGTCTGATCGGCAGGAAATTTAATGATCC 63742 Query 550219 GACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTAATGTTTCTGGAAAACC 550278 |||||| |||||||||| | ||||||||| ||||| | | || || || || Sbjct 63743 TGTAGTTCAGTCAGATATGAAACTTTGGCCTTTTCAAATAATCAGTGAAGGAGGCAAGCC 63802 Query 550279 TTA--TATTGAAGCTACTCATGAAGGATCTGTTAAACAATTTTCACCAGAACAAATTTCA 550336 | || || | | || || |||| | ||| || | || || |||| || Sbjct 63803 CAAGGTACTGGTG-TCCT-ATAAAGGGGCGAAAAAAGCTTTCTATCCTGAGGAAATCTCT 63860 Query 550337 TCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTGTTGGTCAAGAAGTTACG 550396 || ||||| || || | || | | || |||||| | || || | || Sbjct 63861 TCCATGGTAGGAAGGAGACTG-------CTG--AG-GCTTTTTTGGGCCACCCTATCACC 63910 Query 550397 GATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCTACTAAAGAT 550456 |||| || || ||||| ||||| ||||| |||||||||||| | || || ||||| ||| Sbjct 63911 AATGCTGTGATCACTGTGCCAGCCTATTTCAATGACTCACAATGACAGGCAACTAAGGAT 63970 Query 550457 GCTGGACGT-ATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACCTACTGCTGCTGC 550515 || || ||| ||||| || || ||||| || | ||||||||||| || || |||||||| Sbjct 63971 GCAGG-CGTGATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAGCCCACAGCTGCTGC 64029 Query 550516 ACTTGCATATGGACTTGATAAA 550537 |||| ||||| | |||||| Sbjct 64030 CATTGCCTATGGCTTAGATAAA 64051 >seq13417 Length=55113 Score = 102 bits (112), Expect = 7e-16 Identities = 92/116 (79%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 550388 GAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAACGTCAAGCT 550447 || ||||| |||||||| | ||||||||||| ||||| ||||| | ||||| || || Sbjct 20623 GAGGTTACCCATGCAGTAGTTACTGTACCAGCCTATTTCAATGATGCTCAACGCCAGGCA 20564 Query 550448 ACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATGAACC 550503 || |||||||||||| |||||||||| | |||||| | | || |||||||| || Sbjct 20563 ACCAAAGATGCTGGAACTATTGCTGGATTGAATGTTATGAGGATAATCAATGAGCC 20508 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4024389798238280