Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_016160.1 Length=36661 Score E Sequences producing significant alignments: (Bits) Value seq42976 127 5e-25 seq83063 118 2e-22 seq62219 80.6 6e-11 >seq42976 Length=315 Score = 127 bits (140), Expect = 5e-25 Identities = 195/278 (70%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 14604 GCGCTTGGGGAAGGGGAGTTTGCTGGACAGCTCACCGGGAAGGATATCTACCTGGACGGA 14663 || || ||||||||||| ||||| || |||| |||||||| |||||| |||||||| Sbjct 30 GCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTGACCGGGAAAAATATCTTTCTGGACGGT 89 Query 14664 ACAGCGCTGGAGAATGCTGACGGCTCCCAAAACTTCAGCGGGGTAACGTGGGAGTTTCGC 14723 ||| |||| |||||||||||| || ||||||| ||||| |||||| | || Sbjct 90 ACACCGCTACTGAATGCTGACGGATCAGAAAACTTTCCTGGGGTGGTGTGGGAATACCGT 149 Query 14724 GCGGGAACGCAGGCGCAAAAATATATTCAGGGTATTCCCGGTACCGAAAACGAGATCAGC 14783 | ||||| |||||||||| || |||||||| || || | | || || || || | | Sbjct 150 CCCGGAACTCAGGCGCAAATCTACATTCAGGGGATGCCGGCGGCGGAGAATGAAATTACC 209 Query 14784 GTAGGAACTGAGGTATCAAGTGCCACAGCCTGGACGCGCACGTTTACCAATACGCAGCTT 14843 || || || || || ||| | ||| ||| | || |||||| ||||||| Sbjct 210 GTTGGTACCACTGTGCAGAGCAGCACGCCGTGGGCGCATGCATTCACCAATCCGCAGCTG 269 Query 14844 TCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCGCTTTT 14881 || || | ||| | || || |||||||| || || || Sbjct 270 TCCGCTATCCGCGTCCGCCTGAAATGGCCGTCCCTGTT 307 >seq83063 Length=222 Score = 118 bits (130), Expect = 2e-22 Identities = 139/188 (74%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 12832 CATGCTGCAGCTGAATATCCTCGTGAGTGTTGCGGCGTGGTGGCGCAAAAGAGCCGGGTA 12891 ||||| | | ||||||||| |||||||| ||||| ||| | |||||||| ||| || Sbjct 35 CATGCAGAACGTGAATATCCCCGTGAGTGCTGCGGGGTGATCGCGCAAAAATCCCGTGTG 94 Query 12892 GAGAAATATTTTCCATGTAGTAACCTCGCTACCGAGCCGACAGAACATTTTCACCTGTCG 12951 | ||||||||| || ||| | || |||| ||| ||||||||| | | ||| Sbjct 95 GTGAAATATTTCCCCTGTCGCAATATCGCGGTTTCTCCGGAGGAACATTTTGTCTTATCG 154 Query 12952 CCAGAAGACTATGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGTCAC 13011 || ||||| || || ||||| || || ||||| |||||||||| || ||||||||||| Sbjct 155 CCGGAAGATTACGCCGCTGCGGATGATTGGGGAACGGTGATCGGTATTGTTCACAGTCAT 214 Query 13012 CCTGACGC 13019 || || || Sbjct 215 CCGGATGC 222 >seq62219 Length=352 Score = 80.6 bits (88), Expect = 6e-11 Identities = 103/142 (73%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 26730 GTTTTCCCGTATACAAACACATAAATGCCATCGCCATCAAAACAGGTTATGGATACATCA 26789 |||| ||||| ||||| ||||| | |||||||||||||| | ||||| |||||| Sbjct 259 GTTTGTCCGTAGACAAAAACATATACACCATCGCCATCAAAGTAATTTATGTGGACATCA 200 Query 26790 ACAAAGATCTCATCTCCCGGATTGATGGTTCCCTCCATGCTGTCACCGCGAACCGTGATG 26849 | ||| | | || || ||||| || || || | ||| || |||||| ||| ||||| Sbjct 199 ATAAAAACTTGGTCACCAGGATTAATTGTACCTTGCATACTATCACCGGCAACAGTGATC 140 Query 26850 ACTTTTACGCTTTCCTGTGGCC 26871 | ||||| | |||| ||||| Sbjct 139 ATTTTTATGTTTTCACTTGGCC 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 117064491619672