Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq15641 95.1 2e-14 seq22624 86.0 8e-12 >seq15641 Length=40771 Score = 95.1 bits (104), Expect = 2e-14 Identities = 128/171 (75%), Gaps = 8/171 (5%) Strand=Plus/Plus Query 177663 AATCTAACCTACTCTACAAATGACACCTAAATCTCTATCAAGTGGTTCTTTAATAATCAA 177722 |||||||||| | || ||||| | |||||| ||| ||||||||| ||||| || Sbjct 7085 AATCTAACCTGCGTCACCAATGATTCTGGAATCTCCATCCGGTGGTTCTTCAATAACCAG 7144 Query 177723 AATATATCATCATCACAGAAA--ATAGAGCTGTGCCGGGACCATAAAACCCTCAGAATAG 177780 | | | || | ||||||||| || |||||| || |||| ||| ||||||| |||| Sbjct 7145 AGTCTG-CAGC-TCACAGAAAGGATGAAGCTGTTCCAGGACAATAGGACCCTCACCATAG 7202 Query 177781 ACCCGGTC--GAGAGAGGATT-TGGGACGACATCACTGTGAGGTCTCCAAC 177828 |||| ||| ||| |||||| ||||| |||||||||||||||||||| Sbjct 7203 ACCCTGTCAGGAGGGAGGATGCTGGGAATT-ATCACTGTGAGGTCTCCAAC 7252 >seq22624 Length=20715 Score = 86.0 bits (94), Expect = 8e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 186279 AATTTTCTTAAAAGATATAAAGGCCCATCGGAACACTGGGTCGGTCTTCGAAGACAATCC 186338 |||||||| |||||||| |||||||| || || |||||| | || || ||||| ||||| Sbjct 19804 AATTTTCTGAAAAGATACAAAGGCCCTTCTGACCACTGGATAGGCCTCAGAAGAGAATCC 19745 Query 186339 TCTAACCACACTTGGAAATGGATAGACGAGACGGA 186373 || | |||| ||||||||||| |||| | || || Sbjct 19744 TCACATCACATTTGGAAATGGACAGACAACACTGA 19710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628553451737120