Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq20608 214 2e-50 seq7358 111 2e-19 seq1625 102 1e-16 >seq20608 Length=25523 Score = 214 bits (236), Expect = 2e-50 Identities = 411/600 (69%), Gaps = 7/600 (1%) Strand=Plus/Plus Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 |||||||| || ||||| ||||| |||||||||| |||||| || || | |||||| Sbjct 9187 TTTAAACATCGGGCAGGCAAAGTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATT 9246 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || |||| | ||| || || | ||| ||||||| ||||||||| Sbjct 9247 GGAAAATGTGAGACCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGA 9306 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 ||||||||||| || ||||| || | ||||| ||||| | |||| || | || | Sbjct 9307 ACCAGAAAAGAAGATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGC 9366 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | || |||||| | |||||||||||| || |||| || | Sbjct 9367 CTCTTTGTCTCCAATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCAT 9426 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 ||||| || || |||||||| || |||||| || | || ||||| ||||| || Sbjct 9427 CTCAATGGCATTGAAGAGAAATTTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAG 9486 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | |||| |||||||||| | || ||||| || || || || || ||||| ||||| Sbjct 9487 GAGACTAAACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAG 9546 Query 37523 AGCTTCAGATAAT-TGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCC 37581 ||||| | |||| ||||| || | ||| | || | ||||||||||| ||||| | Sbjct 9547 GGCTTCTG-TAATCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGC 9605 Query 37582 CATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCATTTGATA 37641 ||||||| | |||||||||||| ||||||| |||||||| ||| || ||| || Sbjct 9606 CATCACTTGTTGCAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCTA 9665 Query 37642 ATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACGGTCCAAAAACTTG 37701 || ||| | | ||| || || || | | | || || ||| | | |||||| | Sbjct 9666 GGGCTTCCCAGTGCTGAATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAG 9724 Query 37702 CCAATGCACGT--TTATACATCGTCCAAATATCATTATGTTGTATTGGAAATATTACAAA 37759 || | || | ||||||||| ||||||||||| | || || |||| || ||||| Sbjct 9725 CC--TCCATTTTCTTATACATCTGCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq7358 Length=89575 Score = 111 bits (122), Expect = 2e-19 Identities = 99/124 (80%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 37198 CTTCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttt 37257 |||||||||| || || | |||||| ||||| || | ||| ||||| | ||||||||| | Sbjct 30050 CTTCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCT 30109 Query 37258 tAATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATG 37317 | | ||| ||||| || ||||||||||| || |||||||| ||||| || || ||||| | Sbjct 30110 TTAGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAG 30169 Query 37318 CTAC 37321 | || Sbjct 30170 CCAC 30173 >seq1625 Length=211188 Score = 102 bits (112), Expect = 1e-16 Identities = 100/129 (78%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 |||||||| || || | |||||| ||||| || | || ||||| | |||| ||| || Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||| | ||||||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 134560 ACCACACGT 134568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 591629919822880