Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_018271.1 Length=35700 Score E Sequences producing significant alignments: (Bits) Value seq27612 80.6 6e-11 >seq27612 Length=11165 Score = 80.6 bits (88), Expect = 6e-11 Identities = 218/329 (66%), Gaps = 10/329 (3%) Strand=Plus/Plus Query 22068 CCACAAAATACTATTTACAAGGCATACAATGACAAGCGCACACTTGTCGATCATTCCAGA 22127 |||||||||||| | ||| | ||||||||| || | || | ||||| || Sbjct 2217 CCACAAAATACTCTATACCCGTTATACAATGATTTCAGCTTCAATATCTGTTATTCCTGA 2276 Query 22128 ATTTCAAGAGAAAATAGAACTGCTAGAGGCAAAGGATAAGT--TTGCAG-TTACTAAGTC 22184 || | || ||| |||| | |||| | || || |||| || || ||||||| | Sbjct 2277 GTTCTATGAAAAAGTAGA---GTTAGATGGAACGGGAAAGTACTTTAAGACTACTAAGAC 2333 Query 22185 CGAAATAGTCAATCTAAGTTCTGGCAGTGAGATCATATTCAAAGGTCTTAAGACCTCTAG 22244 || |||||||| || |||| |||| || || || ||| |||| |||||| Sbjct 2334 AGATGTAGTCAATAAAATGACTGGAAGTGCTATTATGTTTCGTGGTATTAAAACCTCTTC 2393 Query 22245 TGGAGATCAAACAGCAGCATTAAAATCATTGCAAGGCGTTACAACTTGGATATTAGACGA 22304 ||| |||| |||||| ||||| ||| | || || |||| || | | | || || Sbjct 2394 AGGAAATCAGACAGCAAAGTTAAAGTCAATACATGGGATTACGACCTTCGTTTGTGATGA 2453 Query 22305 AGCGGAGGAGTTAAAAGATGAAGATACTTTCGACAAG--ATCGATTTCAGTATAAGGCAA 22362 ||| ||||||| | ||||||| || ||||||| | | |||| ||| | ||| Sbjct 2454 AGCAGAGGAGTGGACTAGTGAAGATGATTACGACAAGCTAATGCTTTC--TATCCGTCAA 2511 Query 22363 AAAGGCAAACACAACCGAATTATCATTAT 22391 || || | ||| || || ||||||||||| Sbjct 2512 AAGGGAATACAGAATCGGATTATCATTAT 2540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 113992679467568