Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_018454.1 Length=39974 Score E Sequences producing significant alignments: (Bits) Value seq70805 176 1e-39 seq41845 150 5e-32 seq42976 105 2e-18 >seq70805 Length=272 Score = 176 bits (194), Expect = 1e-39 Identities = 203/268 (76%), Gaps = 4/268 (1%) Strand=Plus/Plus Query 18064 CACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCTTCGATTATTGCCAGAC 18123 |||||||||||| ||||| ||||| || || || || |||||||||||||||||||| || Sbjct 1 CACGACGATTGAGAGCACGGCAGAGGGTCGGGCCGGTTATTTCTTCGATTATTGCCA-AC 59 Query 18124 TG-CGGAAAAAGCGGCGCTATCTGGTGCGCCCCTCTCTCAACTGAGCTGGAAATTCTTCT 18182 || | |||||||| | | || | | |||| |||| |||||| || |||| Sbjct 60 TGGCTGAAAAAGCACTGATGCAGGGCAAAACATTATCTCCACTGGACTGGAAGTTTTTCT 119 Query 18183 TTTTCAGCTGGTGGATGAACCCCCAGTATGCAATCGACCCCGTAGAGCCGCTATCACAGC 18242 ||||| ||||||| ||| || ||||| ||||||||||| || |||| | || | || | Sbjct 120 TTTTCTCTTGGTGGAAGAATCCGCAGTACGCAATCGACCCTGTTGAGCAGTTACCGCAAC 179 Query 18243 GCCTGCGCGATTATTTCGATGAGCT-GGAGGCAAAGCACCGCCTTACGCTCAACGACCGC 18301 ||||| || ||||| |||||||| ||||||| | | | |||||||||||||| Sbjct 180 GCCTGACTGACTATTTTGATGAGCTATCAGGCAAA-TATGGAATCACGCTCAACGACCGG 238 Query 18302 CAGAAAGCGTGGTATCAGGCCAAAGAAA 18329 |||||||| ||||| | |||||||||| Sbjct 239 CAGAAAGCCTGGTACTACGCCAAAGAAA 266 >seq41845 Length=897 Score = 150 bits (166), Expect = 5e-32 Identities = 185/253 (73%), Gaps = 0/253 (0%) Strand=Plus/Minus Query 17009 TATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGC 17068 |||||||||||| || ||||| |||||||| ||||| ||||||||| | || || ||||| Sbjct 692 TATGGCACTCACAGATAAACAGGAAATGTTTTGTCGTGAGTACCTCGTAGATTTGAACGC 633 Query 17069 CACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCTCCGA 17128 |||||||||||| ||||| ||||||||||| | ||||| || | || || Sbjct 632 CACACAGGCGGCTATTCGTGCGGGGTACAGTGATAAAACTGCGCGAAGTGTCGGGAATGA 573 Query 17129 AAACCTGTCAAAACCTGACATCCAAAACAGAATCGCTGAACTCAAGAATAAGCGCAACGA 17188 ||||||| |||||||||||||| |||| | || ||| | | || | |||| || Sbjct 572 AAACCTGACAAAACCTGACATCGAAAAACGGATTCAGGAATTAATGAGCAGCCGCAGTGA 513 Query 17189 GGACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGACCAGATGGA 17248 | | | | |||||| |||||||| ||||| | ||||| || ||||||||||| Sbjct 512 GCAACTTAAGGTTGATGCTGAATATGTGCTGAAGCGCCTGGTTGAAATAGACCAGATGGA 453 Query 17249 CGTGGCCGACATT 17261 || ||||||| Sbjct 452 TGTTCTCGACATT 440 >seq42976 Length=315 Score = 105 bits (116), Expect = 2e-18 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 32877 TCCGTCGCCAAAGCCAAAGTGCTGGTGGCGCTGGGCGAAGGGGAGTTCGACGGCCAGCTT 32936 ||||| |||||||| ||| ||||| | || || || |||||||| || | ||| |||| Sbjct 3 TCCGTTGCCAAAGCGAAATTGCTGATCGCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTG 62 Query 32937 GATGGCAAATCCATATTCCTGGACGGCACGCCGCTGGTGAACGCCGACGGGAGCGAGAAT 32996 || ||| || || |||||||| || ||||| |||| || ||||| || || Sbjct 63 ACCGGGAAAAATATCTTTCTGGACGGTACACCGCTACTGAATGCTGACGGATCAGAAAAC 122 Query 32997 TTTCCCGGCGTGAAATGGGAGTTTCGCCCCGGCACACAGGCGCAGGAATACATTCAGGGC 33056 ||||| || ||| ||||| | || ||||| || |||||||| ||||||||||| Sbjct 123 TTTCCTGGGGTGGTGTGGGAATACCGTCCCGGAACTCAGGCGCAAATCTACATTCAGGGG 182 Query 33057 ATTCCCGGTGCTGAAAACG-AATTCCCGCTG--ACGAATATGCAAATCACCACG 33107 || || | || || || | |||| ||| || || | | |||| | || |||| Sbjct 183 ATGCCGGCGGCGGAGAATGAAATTACCGTTGGTACCACTGTGCAGAGCAGCACG 236 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127654412181504