Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_018454.1
Length=39974
Score E
Sequences producing significant alignments: (Bits) Value
seq70805 176 1e-39
seq41845 150 5e-32
seq42976 105 2e-18
>seq70805
Length=272
Score = 176 bits (194), Expect = 1e-39
Identities = 203/268 (76%), Gaps = 4/268 (1%)
Strand=Plus/Plus
Query 18064 CACGACGATTGAAAGCACAGCAGAAGGCCGCGCGGGCTATTTCTTCGATTATTGCCAGAC 18123
|||||||||||| ||||| ||||| || || || || |||||||||||||||||||| ||
Sbjct 1 CACGACGATTGAGAGCACGGCAGAGGGTCGGGCCGGTTATTTCTTCGATTATTGCCA-AC 59
Query 18124 TG-CGGAAAAAGCGGCGCTATCTGGTGCGCCCCTCTCTCAACTGAGCTGGAAATTCTTCT 18182
|| | |||||||| | | || | | |||| |||| |||||| || ||||
Sbjct 60 TGGCTGAAAAAGCACTGATGCAGGGCAAAACATTATCTCCACTGGACTGGAAGTTTTTCT 119
Query 18183 TTTTCAGCTGGTGGATGAACCCCCAGTATGCAATCGACCCCGTAGAGCCGCTATCACAGC 18242
||||| ||||||| ||| || ||||| ||||||||||| || |||| | || | || |
Sbjct 120 TTTTCTCTTGGTGGAAGAATCCGCAGTACGCAATCGACCCTGTTGAGCAGTTACCGCAAC 179
Query 18243 GCCTGCGCGATTATTTCGATGAGCT-GGAGGCAAAGCACCGCCTTACGCTCAACGACCGC 18301
||||| || ||||| |||||||| ||||||| | | | ||||||||||||||
Sbjct 180 GCCTGACTGACTATTTTGATGAGCTATCAGGCAAA-TATGGAATCACGCTCAACGACCGG 238
Query 18302 CAGAAAGCGTGGTATCAGGCCAAAGAAA 18329
|||||||| ||||| | ||||||||||
Sbjct 239 CAGAAAGCCTGGTACTACGCCAAAGAAA 266
>seq41845
Length=897
Score = 150 bits (166), Expect = 5e-32
Identities = 185/253 (73%), Gaps = 0/253 (0%)
Strand=Plus/Minus
Query 17009 TATGGCACTCACCGACAAACAAGAAATGTTCTGTCGCGAGTACCTCATCGACTTAAACGC 17068
|||||||||||| || ||||| |||||||| ||||| ||||||||| | || || |||||
Sbjct 692 TATGGCACTCACAGATAAACAGGAAATGTTTTGTCGTGAGTACCTCGTAGATTTGAACGC 633
Query 17069 CACACAGGCGGCGATTCGGGCGGGGTACAGCGTCAAAACGGCTAACCGCACCGCCTCCGA 17128
|||||||||||| ||||| ||||||||||| | ||||| || | || ||
Sbjct 632 CACACAGGCGGCTATTCGTGCGGGGTACAGTGATAAAACTGCGCGAAGTGTCGGGAATGA 573
Query 17129 AAACCTGTCAAAACCTGACATCCAAAACAGAATCGCTGAACTCAAGAATAAGCGCAACGA 17188
||||||| |||||||||||||| |||| | || ||| | | || | |||| ||
Sbjct 572 AAACCTGACAAAACCTGACATCGAAAAACGGATTCAGGAATTAATGAGCAGCCGCAGTGA 513
Query 17189 GGACGTGGGTATAAATGCTGCTTATGTGCTCCAGCGCTTAGTTGAGATTGACCAGATGGA 17248
| | | | |||||| |||||||| ||||| | ||||| || |||||||||||
Sbjct 512 GCAACTTAAGGTTGATGCTGAATATGTGCTGAAGCGCCTGGTTGAAATAGACCAGATGGA 453
Query 17249 CGTGGCCGACATT 17261
|| |||||||
Sbjct 452 TGTTCTCGACATT 440
>seq42976
Length=315
Score = 105 bits (116), Expect = 2e-18
Identities = 165/234 (71%), Gaps = 3/234 (1%)
Strand=Plus/Plus
Query 32877 TCCGTCGCCAAAGCCAAAGTGCTGGTGGCGCTGGGCGAAGGGGAGTTCGACGGCCAGCTT 32936
||||| |||||||| ||| ||||| | || || || |||||||| || | ||| ||||
Sbjct 3 TCCGTTGCCAAAGCGAAATTGCTGATCGCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTG 62
Query 32937 GATGGCAAATCCATATTCCTGGACGGCACGCCGCTGGTGAACGCCGACGGGAGCGAGAAT 32996
|| ||| || || |||||||| || ||||| |||| || ||||| || ||
Sbjct 63 ACCGGGAAAAATATCTTTCTGGACGGTACACCGCTACTGAATGCTGACGGATCAGAAAAC 122
Query 32997 TTTCCCGGCGTGAAATGGGAGTTTCGCCCCGGCACACAGGCGCAGGAATACATTCAGGGC 33056
||||| || ||| ||||| | || ||||| || |||||||| |||||||||||
Sbjct 123 TTTCCTGGGGTGGTGTGGGAATACCGTCCCGGAACTCAGGCGCAAATCTACATTCAGGGG 182
Query 33057 ATTCCCGGTGCTGAAAACG-AATTCCCGCTG--ACGAATATGCAAATCACCACG 33107
|| || | || || || | |||| ||| || || | | |||| | || ||||
Sbjct 183 ATGCCGGCGGCGGAGAATGAAATTACCGTTGGTACCACTGTGCAGAGCAGCACG 236
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 127654412181504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |