Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq7134 100 2e-16 >seq7134 Length=91468 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || || |||| |||| || || ||| ||| || || || ||||| ||||| Sbjct 86758 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 86699 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 86698 CAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 86639 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 86638 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 86579 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || || || |||||||| Sbjct 86578 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || || |||| |||| || || ||| ||| || || || ||||| ||||| Sbjct 86986 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 86927 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| |||||| |||||||| |||| | ||| || || | ||| Sbjct 86926 CAGAGTGCGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 86867 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 86866 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 86807 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || || || |||||||| Sbjct 86806 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 |||||| || || |||| |||| || || ||| |||||| || || ||||| ||||| Sbjct 87214 GCCGCCTCTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGA 87155 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || |||| |||| ||| || |||||||| |||| | ||| || || | ||| Sbjct 87154 CAGAGTGCGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGG 87095 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || ||| | | | || | |||||| Sbjct 87094 GATGCCCTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCAC 87035 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || || ||||| || || || || |||||||| Sbjct 87034 CTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380506889569356