Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019490.1 Length=49329 Score E Sequences producing significant alignments: (Bits) Value seq27612 235 2e-57 seq7440 82.4 2e-11 >seq27612 Length=11165 Score = 235 bits (260), Expect = 2e-57 Identities = 432/634 (68%), Gaps = 22/634 (3%) Strand=Plus/Minus Query 25200 AATTGTTCCGACAAGTTCTCTATGTTGTCTAAATAGGTCGTGTGGATATGTAGGACATCG 25259 || ||||| || | ||| || |||| || || |||||||| || || || | |||| Sbjct 2705 AACTGTTCTGAAAGGTTTTCCTTGTTATCCAAGTAGGTCGTATGAATGTGCAAAACATTA 2646 Query 25260 GGGTGGGTGCTTATCTGCACATCTACACCGTCAATCTGTACTATCTTGTGGGTGTTTTCA 25319 || || || || || || | ||||||||| |||| ||| | |||||| || ||||| Sbjct 2645 GGATGAGTCGAGATTTGAACCTGTACACCGTCTATCTCTACAAGCTTGTGAGTTTTTTCT 2586 Query 25320 ATGTATTTTTTATAAATAAAATGGTCGGAGTCGGTAGGGTTGAGTATCAGTATAACTCTT 25379 | ||||| |||||||||||||| | ||||| |||||||| | || | |||| | Sbjct 2585 AAATATTTCTTATAAATAAAATGATTAGAGTCAGTAGGGTTCATGATAATGATAATCCGA 2526 Query 25380 AACTGTTTATTTTTCTGACGAATGGATAGGATTAACTTTTCGTAATCTTCCTCGCTTTCC 25439 |||| | || ||||| || || || |||| ||| |||||||| || || || | Sbjct 2525 TTCTGTATTCCCTTTTGACGGATAGAAAGCATTAGCTTGTCGTAATCATCTTCACTAGTC 2466 Query 25440 CACTCTTCCATTTCATCGCCCACGAAGGTGGTTATCCCTTGTATGGATTTAAGGTTTGCC 25499 ||||| || |||||| | |||||||| || ||||| ||||| || || | ||||| Sbjct 2465 CACTCCTCTGCTTCATCACAAACGAAGGTCGTAATCCCATGTATTGACTTTAACTTTGCT 2406 Query 25500 GTTTGGTTTCCTGACGAAGTTTTTATCCCTCTAAATAAAACACTACTTCCTGAAAATTTA 25559 || || |||||||| || ||||| || || | ||| | || | |||||| | | |||| Sbjct 2405 GTCTGATTTCCTGAAGAGGTTTTAATACCACGAAACATAATAGCACTTCCAGTCATTTTA 2346 Query 25560 TTTAGTATTTCATTGTTTGTTACTGTAAAATA--TTCCTGCACGCCCTCTTTTTCTATTT 25617 || | || || | || || |||| || |||| | || ||| |||| || Sbjct 2345 TTGACTACATCTGTCTTAGTAGTCTTAAAGTACTTTCC--CGTTCCATCTAACTCTACTT 2288 Query 25618 TCTCCTCAAACTCTGGAATGATAGAAATACGAGCGGAGGTCATCGTGTAACGGCTAAAGA 25677 | || | ||||| ||||| | ||| || ||| || |||| || |||||| || ||| Sbjct 2287 TTTCATAGAACTCAGGAATAACAGATATTGAAGCTGAAATCATTGTATAACGGGTATAGA 2228 Query 25678 GTATCTTATGCCC---------------AG---CTTCAAAAGATAATCGCTCTACAAAGG 25719 |||| || || | || |||||||| ||| | ||||| ||| | Sbjct 2227 GTATTTTGTGGACTAACTTCTCTATGGGAGTCATTTCAAAAGTTAACCTCTCTATAAATG 2168 Query 25720 TAGTCGCATTGTAGGATTTTGCAGACCCTCTACCTCCTGTAAGGAGTATAATAAACTTGT 25779 || ||||| | || || | || || | ||||||||||| || || |||||||| | Sbjct 2167 CAGCTGCATTAAAAGACTTGCCCGAACCACGACCTCCTGTAATAAGAATTATAAACTTCT 2108 Query 25780 CTTTGTTGGTGTAAAGTGGGTTATATACTTCTTG 25813 |||||| | |||||||||| ||||| ||||| Sbjct 2107 CTTTGTCCCTATAAAGTGGGTAATATATCTCTTG 2074 >seq7440 Length=141321 Score = 82.4 bits (90), Expect = 2e-11 Identities = 122/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 29085 GTACCCCACGCTTCTCTAATGCTACCGTCTACCTTTTGAAAGTAGAAACGAACAATACCC 29144 ||||| | |||||||| | |||| ||||||||||| |||||||| || |||||| Sbjct 18976 GTACCGTAGGCTTCTCTTAGAGTACCATCTACCTTTTGGAAGTAGAACTTTACGATACCC 19035 Query 29145 TGTTGCATTCTCTTTTTTAGTTTGTAATTTGCCCACGCtttttttAGGCATTCGCTAAAT 29204 | || ||| | ||| |||||| | |||||||| || ||||||| ||| || | | Sbjct 19036 TTTTTCATAGCTTCTTTGAGTTTGAAGTTTGCCCAAGCCTTTTTTAAAGCTTCACTCATT 19095 Query 29205 TTTAAACCTGTTTGTTTGAAAAACTGCCACGCTAATTGCATTATTTGTTTTAA 29257 | ||||| | |||| | || ||||| || | | ||| || ||| |||| Sbjct 19096 GTAAAACCATTGCGTTTTACGAATTGCCAAGCGAGTGTCATAATCTGTCTTAA 19148 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 157557432663224