Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq62545 168 1e-36 seq20608 123 5e-23 seq2491 98.7 2e-15 seq2665 86.0 1e-11 >seq62545 Length=348 Score = 168 bits (186), Expect = 1e-36 Identities = 183/243 (75%), Gaps = 0/243 (0%) Strand=Plus/Minus Query 241385 AGCTGCTGACAGCCTTGGCACATGTGCCACAGGACCTCCTGTTTGAGTTGGGCCACCTGG 241444 ||| |||| ||||| | || | ||| || ||||| |||||| || ||||||||||| Sbjct 256 AGCAGCTGGCAGCCATTGCTGACGTGGGTCATGACCTTCTGTTTTAGCTGGGCCACCTGC 197 Query 241445 TCCCGCAGAACGGACGCGGTATTGGACAGTCCTGCGTTGTCAGACTTGAGCACCTTCACT 241504 ||||| || | || || | ||||| || || || |||| |||||| |||||| Sbjct 196 TCCCGGAGGAGCCCGGCAGTGCTCGACAGCCCCGCATTCTCAGCCTTGAGTGTCTTCACC 137 Query 241505 TTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCTGCCAAG 241564 || |||||||| ||||||||||||||||| || ||| ||||| |||||||| |||| Sbjct 136 TTGTCCTCCAGGCGCGCGATGCGTTCCAGCTTCCGCTTCCGGCACTTGGTGGCAGCCAGT 77 Query 241565 CGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCGATCGGA 241624 || ||||| || | ||| || ||| | |||||||| |||||||| ||||| | ||| || Sbjct 76 CGATTCCGCAGCCGCTTGCGCTCCACTTTGATGCGCTCCTGGTCTTCCATATTGATGGGG 17 Query 241625 GAC 241627 ||| Sbjct 16 GAC 14 >seq20608 Length=25523 Score = 123 bits (136), Expect = 5e-23 Identities = 359/551 (65%), Gaps = 9/551 (2%) Strand=Plus/Plus Query 48020 ACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCACAATCTGC 48079 || ||||| |||| |||||| ||||||| |||||| || | | | || | Sbjct 9092 ACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTCT 9151 Query 48080 TTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCAGGCAAAG 48139 || || | | ||| | ||||||| ||||||| || | | | | |||||||||| Sbjct 9152 TTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTT---AAACATCGGGCAGGCAAAG 9208 Query 48140 TCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACCAGGCATG 48199 || | ||| || |||| || | ||| || || | ||||| || ||||||||||| | Sbjct 9209 TCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACG 9268 Query 48200 ACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGATGCCCTCC 48259 | || | ||||||||||| |||| || ||||| ||||| |||||||| || ||| Sbjct 9269 AGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCC 9328 Query 48260 ACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGATCCAGGAA 48319 || | || || || | | ||||| | | ||| | |||||| ||||| | Sbjct 9329 ACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGC 9388 Query 48320 AGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGAAGAGCTTC 48379 | ||||| |||||||||||||| | | |||||| |||| ||||| |||||| Sbjct 9389 AAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAAT 9448 Query 48380 TTGCACTCACCTGCGTCCGCAACATAGGT---AGTGAGCAGCTTTGCGTACATCTCAGAG 48436 || | || | |||| || || || | |||| || | |||| ||||| Sbjct 9449 TTCCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACT---AAACATTTCAGAA 9505 Query 48437 TGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACACCTGCACT 48496 | | || || || || || ||||| || ||||| ||| || | ||| ||| Sbjct 9506 CGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACT 9565 Query 48497 TCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAGCAAAGAAG 48556 ||| | || | ||||| || || ||||| ||||| ||||| | |||||||| Sbjct 9566 TCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAA 9625 Query 48557 GCAAGGACATG 48567 || || ||||| Sbjct 9626 GCCAGAACATG 9636 >seq2491 Length=174120 Score = 98.7 bits (108), Expect = 2e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 241499 TTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCATTTGGTGGCT 241558 |||||||| ||||||||||| ||||| | |||||| || | ||||| |||| ||| Sbjct 91855 TTCACTTTTTCCTCCAGCCGGGCGATCCTTTCCAGCTTTCTTTTCCGGCACTTGGAGGCA 91914 Query 241559 GCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTCCTCCATGTCG 241618 || | |||||||| | | ||| | |||||||| || || |||||| |||||||||| Sbjct 91915 GCAATGCGGTTCCTCATGCGCTTCCTCTCCGCCTTAATCCGCTCCTGGGACTCCATGTCG 91974 Query 241619 ATCGGAGAC 241627 || |||||| Sbjct 91975 ATGGGAGAC 91983 >seq2665 Length=168205 Score = 86.0 bits (94), Expect = 1e-11 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 213528 GTGTACTCCATGATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGG 213587 || ||||| | || || |||||||||||||||||| ||| || ||||||||||| ||| Sbjct 87835 GTATACTCTACTATTTCTGTGCACAGGTTGCTGCATTTGATCGTTCCCAGGTTCTGCTGG 87894 Query 213588 TTTGACTTTGCGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTG 213646 ||| || || | || ||||| ||||| |||||||| |||| || |||||| ||| Sbjct 87895 -TTGCTCTTCCGATTACAGGAATCTTTGTAAAGCATGTACGGGGTACCTGTCTCTGTCTG 87953 Query 213647 GGAC 213650 ||| Sbjct 87954 AGAC 87957 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 930452547988480