Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq20608 105 1e-17 seq1625 86.0 1e-11 >seq20608 Length=25523 Score = 105 bits (116), Expect = 1e-17 Identities = 310/471 (66%), Gaps = 15/471 (3%) Strand=Plus/Minus Query 25601 TGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTCACCA 25660 |||| ||||||||| | |||||| ||||| || || || || ||| | || | | Sbjct 9629 TGGCTTTCTTTGCAACAAGTGATGGCATAGTAAATGAAAACTTGGTGGAGTGTTTTAGCC 9570 Query 25661 GGGAAGTGCAG--TACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAAAA 25718 ||||| ||| ||| || ||| |||||||| || ||||| || ||||| ||||| Sbjct 9569 AAGAAGTTCAGATTACA--GAAGCCCTCTGTTTCTATGGCTTCCAAATTGCCATGGAAAA 9512 Query 25719 TGTGCACTCTGAGGTGTATGCCAAGCTTCTGATG---ACGTACATTACAGACGTCGCCGA 25775 | | ||||| ||| | | || || || || ||||||| ||| | || Sbjct 9511 CATACGTTCTGAAATGTTT---AGTCTCCTCATTGACACTTACATTAAGGACTCCAAAGA 9455 Query 25776 GAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTG 25835 || | || || |||||| ||| || || | | |||| |||||| || Sbjct 9454 AAGGAAATTTCTCTTCAATGCCATTGAGATGATGCCTCGTGTAAAGAAGAAGGCAGATTG 9395 Query 25836 GGCCATGAAGTGGATCAACAGCCAGAGCG-CTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 ||| || ||||| || || || | |||| | ||| || || |||||||||||| Sbjct 9394 GGCTTTGCCTTGGATTGG-AGACAAAGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTTG 9336 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 || | ||||| || ||||| || ||||| ||||| | || |||||||||||| | Sbjct 9335 CTACGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCAATATTCTGGCTCAAGAATC 9276 Query 25955 AGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCC 26014 | || | |||| || || |||||||| || || || ||||| || | ||| | | Sbjct 9275 AAGGACTCGTGCCTGGTCTCACATTTTCCAATGAACTTATTAGCAGAGATAAAGGTTTAC 9216 Query 26015 ACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACAAACCTT 26065 || | || |||||||||| | | | | ||| |||| |||||||||| Sbjct 9215 ACTGTGACTTTGCCTGCCCGATGTTTA---AACACCTGCTGCACAAACCTT 9168 >seq1625 Length=211188 Score = 86.0 bits (94), Expect = 1e-11 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 26245 AACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAG 26304 || ||||| ||||||||||| || || || ||||||||||||| ||||||||||| ||| Sbjct 133131 AATCCGTTTGACTTTATGGAGAATATCTCACTGGAAGGGAAGACTAACTTCTTTGAGAAG 133072 Query 26305 AGGGTCGGCGACTATCA 26321 || || ||||| ||||| Sbjct 133071 AGAGTAGGCGAGTATCA 133055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 927767665127680