Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019522.1 Length=48454 Score E Sequences producing significant alignments: (Bits) Value seq83776 107 6e-19 seq64902 91.5 5e-14 >seq83776 Length=220 Score = 107 bits (118), Expect = 6e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 3374 TTTTTCATCCAGAACGCGATAACCCCAACCACTACCGACAGGGCCAAATATTTCGGTAGC 3433 |||||| || | || ||| ||||| || ||||| || || || ||||||||||| Sbjct 162 TTTTTCTTCAACCACCTCATAGCCCCAGCCCTCACCGATCGGTCCGAAAATTTCGGTAGC 103 Query 3434 TCGCATGAACATGTATGCGCTTGTGATGCTCGTACCTTCAAAACCTGCGCCGGCCAACGG 3493 ||||| |||||||| || | ||||| ||||||| ||| || ||||| | || || Sbjct 102 ACGCATAAACATGTAGTTACTGTTAATGCTGGTACCTTGAAATCCCGCGCCCTCTAAAGG 43 Query 3494 TTTCGTGTAGCGCGGATCTGTGCGTTGTACCCGCTTCCAGAT 3535 || || |||| ||||||||||| |||||| |||||||||| Sbjct 42 CTTGGTAAAGCGTGGATCTGTGCGCTGTACCTGCTTCCAGAT 1 >seq64902 Length=320 Score = 91.5 bits (100), Expect = 5e-14 Identities = 160/233 (69%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 1117 TCCTTGAACTGTTTAACGCCCTTGCATGGGTTGCCCTTACACAATCCCCGCTCATAACCC 1176 |||||||| || || || || ||||| |||| || || ||| |||||||||||| Sbjct 296 TCCTTGAATTGCCGCACACCTTTACATGGATTGCTTTTTACCAGTCCGCGCTCATAACCC 237 Query 1177 CATCTGAACACTCGCGACATAAACGCCTTTTCTCTGTTCGCCTGCGTCTTACTTTTTAGC 1236 || | || || || || | | || ||||| ||||| ||||| ||| ||||| Sbjct 236 CAGCCAAAAACACGGGATAGCAGCGTTTTTTCCCTGTTTGCCTGTGTCGGGCTTTTAGTG 177 Query 1237 CCCCGCTTGTCCATATATTTTCTGACGTGTTCGGGCTTAATTGAATCCGGCGACATCCCC 1296 || ||||| ||||||||||| | || || || ||||| || ||| ||| ||| | Sbjct 176 CCGCGCTTATCCATATATTTACGGATATGCTCAGGCTTTATATTATCAGGCTGCATTTTC 117 Query 1297 CCAAACACTGGAATTATTTTCGCAGAGTATTTCCGGTAGTCCTTTTGCGTTTC 1349 || || || || | || || | || ||||| || || || || || ||||| Sbjct 116 CCGAATACAGGTAATAGCTTGCCGGAATATTTACGATAATCTTTCTGTGTTTC 64 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 154760517332224