Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019526.1 Length=345809 Score E Sequences producing significant alignments: (Bits) Value seq25394 107 4e-18 seq20717 98.7 2e-15 >seq25394 Length=23467 Score = 107 bits (118), Expect = 4e-18 Identities = 202/294 (69%), Gaps = 6/294 (2%) Strand=Plus/Minus Query 48481 CTGTAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTA 48540 ||||| |||||||||||||||||||| | || ||||| || || || |||||| | Sbjct 11914 CTGTAGTAGCTGGTACAAAATACCGTGGCCAGTTTGAAGAGCGAATACAATCTATTATCA 11855 Query 48541 AAGAACTTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48600 | ||||| || ||| |||||||| | ||||| || ||| | |||| | | | Sbjct 11854 ACGAACTAAACAAAAACCCTGATGTAATTATATTCATCGACGAAATTCATACACTAGTTG 11795 Query 48601 GTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTT 48660 |||| ||| | || | |||| || |||||| | |||||| | |||||||| || Sbjct 11794 GTGCAGGTTCT-GCTG--CTGGTTCAATGGATGCGGCCAATATTTTAAAACCTGCTCTGG 11738 Query 48661 CACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48720 |||| || || || | ||| ||||||||||| | || || ||||| | | || | Sbjct 11737 CACGAGGAGAGATCCAATGTATTGGTGCAACAACATTAGACGAGTATCGTAATAGTATAG 11678 Query 48721 AAAAAGATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTA 48774 ||||||||| || || || || ||| ||||| | |||| ||||||| Sbjct 11677 AAAAAGATGGAGCTTTAGAGCGTCGTTTCCAGAAAAT---TCTAGTAGAACCTA 11627 >seq20717 Length=30955 Score = 98.7 bits (108), Expect = 2e-15 Identities = 132/181 (73%), Gaps = 6/181 (3%) Strand=Plus/Plus Query 321595 GGTCAACATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCACAGAAATTT 321654 ||||||||||||||||| ||||| || ||| || ||| ||||| ||| | | Sbjct 13494 GGTCAACATTTAAATGTTAATGTGTTTGATCGTAGTCTATTGGAAGATGCAATGGAGCAC 13553 Query 321655 CCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGT--TCGTT-TTAAT 321711 |||||||||||||| || | ||||||||||||||||||||||| || | || | || Sbjct 13554 CCTGAAAAATATCCACAGTTAACTATTCGTGTTTCTGGATATGCTGTGAACTTTGTGAAG 13613 Query 321712 TCTCTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACTACTAAGTTCTAA 321771 | | || | |||||||||| || |||||| |||| | || ||||| |||||| Sbjct 13614 T---TAACTAGAGAACAACAATTAGACGTAATTAATAGAACAATTACAACTAAATTCTAA 13670 Query 321772 T 321772 | Sbjct 13671 T 13671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1105142418855264