Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_019709.1 Length=41567 Score E Sequences producing significant alignments: (Bits) Value seq83063 141 2e-29 seq42976 136 1e-27 seq85032 93.3 1e-14 >seq83063 Length=222 Score = 141 bits (156), Expect = 2e-29 Identities = 140/179 (78%), Gaps = 4/179 (2%) Strand=Plus/Plus Query 12794 TGAATATCCTCGTGAGTGCTGCGGTGTGGTGGCGCAAAAAAGCCGTGT--TGAACGTTAT 12851 ||||||||| |||||||||||||| ||| | ||||||||| |||||| |||| ||| Sbjct 46 TGAATATCCCCGTGAGTGCTGCGGGGTGATCGCGCAAAAATCCCGTGTGGTGAA--ATAT 103 Query 12852 TTTCCTTGCCGGAATCTTGCCGCTGCGCCGAAGGAAAATTTTGTCCTCTGCCCGGAAGAT 12911 || || || || ||| | || | | | ||| ||||| |||||||| | | ||||||||| Sbjct 104 TTCCCCTGTCGCAATATCGCGGTTTCTCCGGAGGAACATTTTGTCTTATCGCCGGAAGAT 163 Query 12912 TACGCAGCTGCTGAGGACTGGGGTACGGTGATCGCCATCGTTCACAGCCACCCTGACGC 12970 ||||| ||||| || || ||||| |||||||||| || |||||||| || || || || Sbjct 164 TACGCCGCTGCGGATGATTGGGGAACGGTGATCGGTATTGTTCACAGTCATCCGGATGC 222 >seq42976 Length=315 Score = 136 bits (150), Expect = 1e-27 Identities = 213/305 (70%), Gaps = 0/305 (0%) Strand=Plus/Plus Query 14527 TCTGTAGCGAAGGCAAAAATCCTCGTTGCGCTTGGGGAAGGTGAGTTTGCAGGGCAGCTC 14586 || || || || || ||| | || | || || |||||||| || ||||| ||| |||| Sbjct 3 TCCGTTGCCAAAGCGAAATTGCTGATCGCCCTCGGGGAAGGGGAATTTGCCGGGGAGCTG 62 Query 14587 ACCGGCAAAGATATCTACCTGGACGGAACAGCGCTGGAGAATGCTGACGGCTCCCAAAAC 14646 ||||| ||| |||||| |||||||| ||| |||| |||||||||||| || ||||| Sbjct 63 ACCGGGAAAAATATCTTTCTGGACGGTACACCGCTACTGAATGCTGACGGATCAGAAAAC 122 Query 14647 TTCAGCGGGGTAACGTGGGAGTTTCGCGCGGGAACTCAGGCGCAAAAATATATTCAGGGT 14706 || ||||| |||||| | || | |||||||||||||||| || |||||||| Sbjct 123 TTTCCTGGGGTGGTGTGGGAATACCGTCCCGGAACTCAGGCGCAAATCTACATTCAGGGG 182 Query 14707 ATTCCCGGTACCGAAAACGAGATCAGCGTAGGAACTGAGGTATCAAGTGCCACAGCCTGG 14766 || || | | || || || || | ||| || || || || ||| | ||| Sbjct 183 ATGCCGGCGGCGGAGAATGAAATTACCGTTGGTACCACTGTGCAGAGCAGCACGCCGTGG 242 Query 14767 ACGCGCACGTTTACCAATACGCAGCTTTCAGCAGTTCGCCTGCGTCTTAAATGGCCCTCG 14826 ||| | || |||||| ||||||| || || | ||| | || || |||||||| || Sbjct 243 GCGCATGCATTCACCAATCCGCAGCTGTCCGCTATCCGCGTCCGCCTGAAATGGCCGTCC 302 Query 14827 CTTTT 14831 || || Sbjct 303 CTGTT 307 >seq85032 Length=217 Score = 93.3 bits (102), Expect = 1e-14 Identities = 125/174 (72%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 32124 AAAACATATGGATTCAATAAGAAAACAGATCGAATAGCCGATGAGCAAATTTCTCAGTTA 32183 |||||||| || ||| ||||||| || || ||||| ||| || | || | | Sbjct 196 AAAACATACGGGTTCGGGAAGAAAAATGACCGGATAGCAGATTCTCAGCTGTCAGAAATT 137 Query 32184 ACAGGACTGTCAAGGCAGAATGTTAACAAGGCTAAAAAAGAACTGATTTCAATGAATTGC 32243 || || ||||| | ||||| ||||||||||| || || ||| | ||||||||||||| | Sbjct 136 ACCGGCCTGTCCCGTCAGAACGTTAACAAGGCAAAGAACGAATTAATTTCAATGAATTAC 77 Query 32244 CTGTTTATGGATGGAAATCAAATCGGTGTAAACAGGGAGGTATCTGCGTGGCAA 32297 | | | ||||| ||| | || || || |||| |||||| || |||||| || Sbjct 76 ATCGTGAAAGATGGCAATAAGATTGGGGTTAACAAGGAGGTTTCGGCGTGGAAA 23 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 132746396321256