Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq1881 212 4e-49 seq17588 156 3e-32 seq3881 102 5e-16 seq11635 100 2e-15 seq13417 86.0 4e-11 >seq1881 Length=198091 Score = 212 bits (234), Expect = 4e-49 Identities = 373/537 (69%), Gaps = 10/537 (2%) Strand=Plus/Plus Query 474333 TTGGTATTGATTTAGGAACTACTTACAGTTGTGTAGCTGTTTGGCAAAATGGTAAAGTAG 474392 |||| |||||| | || || || ||| |||||| | ||| | || | || ||||| | Sbjct 78964 TTGGCATTGATCTTGGCACCACCTACTCTTGTGTGGGTGTCTTCCAGCACGGGAAAGTGG 79023 Query 474393 AAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTCTTTTACTGAAA 474452 |||||||||||||||| || || || |||| || ||| |||||| | |||||||| | Sbjct 79024 AAATAATTGCCAATGATCAGGGAAACCGAACCACCCCAAGTTATGTTGCCTTTACTGATA 79083 Query 474453 CTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAATCCTGTTAATACTA 474512 | ||| | || || |||||||| || | |||| |||| || || ||| || Sbjct 79084 CCGAATGATTGATCGGTGATGCTGCAAAGAACCAAGTTGCAATGAACCCCACTAACACGG 79143 Query 474513 TTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCACTGTCCAATCTGATA 474572 |||||||||| || | | || || |||| ||||||||| | ||||||||| |||| Sbjct 79144 TTTTTGATGCCAAGCGTCTTATAGGACGTAGATTTGATGATGCTGTTGTCCAATCAGATA 79203 Query 474573 TGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATATATAGAA--GCAAT 474630 || |||||||| || | |||| | |||| || || | || | | || | ||| Sbjct 79204 TGAAGCATTGGCCCTTCATGGTGGTGAATGATGCAGGCAGGCCCAAGGTCCAAGTGGAAT 79263 Query 474631 ACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAATGGTTTTAGCCAA 474690 ||| | || || || ||| || | || || | | || || |||||||| | || Sbjct 79264 ACAAG--GGAGAGACAAAAAGTTTCTATCCAGAGGAGGTGTCATCTATGGTTTTGACAAA 79321 Query 474691 AATGAAACAAACCGC--GAGCTCATATCTTGGACAAGA-AGTAACTGATGCAGTAATTAC 474747 |||||| ||| || |||| ||||| || |||| || || |||| || | || Sbjct 79322 AATGAAGGAAATTGCAGAAGCT--TATCTAGG-GAAGACTGTTACCAATGCTGTTGTCAC 79378 Query 474748 TGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAATTGC 474807 ||| || || ||||| ||||| ||||| | ||| ||||| |||||||| |||| ||||| Sbjct 79379 TGTACCTGCTTATTTCAATGACTCTCAGCATCAGGCAACCAAAGATGCTGGAACTATTGC 79438 Query 474808 AGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATGG 474864 ||||| ||||| | | || || ||||| ||||| || || || ||||||||| Sbjct 79439 TGGTCTCAATGTACTCAGGATCATCAATGAGCCAACTGCTGCTGCTACTGCTTATGG 79495 Score = 156 bits (172), Expect = 3e-32 Identities = 452/680 (66%), Gaps = 18/680 (3%) Strand=Plus/Plus Query 475548 TTGAAGTTGATTCTCTTTTTGAAGGAATTGATTATAATACTCTTATTACAAGGGCTAAAT 475607 |||| |||| || || | |||||||||||||| |||| ||||| | || | | Sbjct 79780 TTGAGATTGACTCACTCTATGAAGGAATTGATTTCTATACCTCCATTACCCGTGCCAGGT 79839 Query 475608 TTGAAGATATTTGTTCTGATCTCTTTAGAAAAACAATTGAACCCGTTGAACAAGTTCT-C 475666 ||||||| | | |||| || || | || | || ||||| || ||| || | Sbjct 79840 TTGAAGAACTCAATGCTGACCTATTCTGTGGCACCCTGGATCCCGTAGAGAAAGCCCTGC 79899 Query 475667 AGAGATTCTAAACTTGACAAATCACAAGTCCATGAAATTGTTCTTGTAGGAGGTTCAACA 475726 || ||| |||| || ||||| || || ||||||| ||||| || ||||| ||||| || Sbjct 79900 AG-GATGCTAAGCTAGACAAGTCCCAGATCCATGATATTGTCCTAGTAGGTGGTTCTACC 79958 Query 475727 AGAATTCCAAAAATAAGAGAAATGCTTTCATCA-TATTTTAATGGTAAAAAGTTAAATGA 475785 |||| || || || ||||| | || | | || ||||| ||| | | ||| | Sbjct 79959 CGAATCCCCAAGAT-TCAGAAACTTCTGCAGGACTTCTTCAATGGAAAAGAACTGAATAA 80017 Query 475786 AAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTATC 475845 || | || |||||||| |||||||| ||||| || |||||||| ||||| ||| | || Sbjct 80018 GAGCATCAACCCTGATGAGGCTGTTGCTTATGGTGCAGCTGTCCAGGCAGCCATTCTGTC 80077 Query 475846 AGGTCAATCAGACGAGAAACTAAATAATATTGTACT--TGTT-GACGTAACTCCACTTTC 475902 || | || | |||| | || ||| | || |||| || || ||||| ||||| Sbjct 80078 TGG--AGACAAATCTGAAAATGTTCAAGATT-TGCTGCTGTTAGATGTCACTCCTCTTTC 80134 Query 475903 ATTAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTAT 475962 | ||| ||||||| | ||| ||| | ||||| || || | | ||||| | || Sbjct 80135 CCTTGGTATTGAAACTGCTGGTGGGGTCATGACAGTCCTCATCAAGCGCAATACAACCAT 80194 Query 475963 CCCATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCAT 476022 || ||| | || || || | || || ||||| || || | ||| ||| Sbjct 80195 TCCTACCAAGCAGACACAAACCTTCACTACCTACTCTGACAACCAGCCTGGTGTGCTCAT 80254 Query 476023 CCAAATCTTTGAAGGTGA--AAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTT 476080 || | | ||||||||| | | | | || | ||||| ||| ||||| | || Sbjct 80255 TCAGGTTTATGAAGGTGAGCATGCCA--TGACCAGGGATAACAACCTGCTTGGCAAGTTC 80312 Query 476081 AATCTTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGAT 476140 | || ||| || || | ||| ||| | || |||||||| |||||||| |||||||| Sbjct 80313 GAACTCACAGGCATACCACTTGCCCCCCGTGGTGTTCCTCAGATTGAAGTCACTTTTGAC 80372 Query 476141 ATTGATGCAAATGGTATTCTTAATGTTACTGCTTGTGATA--AATCTAGTAACAAGAGTA 476198 | |||||| ||||| || || ||||| ||||| ||||| | | || || ||||| | Sbjct 80373 ACTGATGCCAATGGCATCCTCAATGTCTCTGCTGTTGATAAGAGTACAGGAA-AAGAG-A 80430 Query 476199 AAAATATAACTATTACAAAC 476218 | || || ||||| || ||| Sbjct 80431 ACAAGATCACTATCACTAAC 80450 >seq17588 Length=70272 Score = 156 bits (172), Expect = 3e-32 Identities = 268/388 (69%), Gaps = 12/388 (3%) Strand=Plus/Minus Query 475785 AAAGTGTAAATCCTGATGAAGCTGTTGCATATGGAGCTGCTGTCCAAGCAGCTATTTTAT 475844 || |||| || || ||||| | ||||| | || |||||||| |||| ||| ||||| Sbjct 32102 AAGGTGTTAACCCAGATGAGGTAGTTGCTTTAGGTGCTGCTGTACAAGGTGCTGTTTTAA 32043 Query 475845 CAGGTCAATCAGACGAGAAACTAAATAATATTGTACTTGTTGACGTAACTCCACTTTCAT 475904 | | |||| || |||| | |||| || | || |||||||| ||||||| Sbjct 32042 CTG---------ACGA--AATTAAAGG-TGTTGTTCTATTAGATGTAACTCCTCTTTCAT 31995 Query 475905 TAGGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCC 475964 ||||| |||| ||| | || || | |||||||| |||||||| || ||| |||| | Sbjct 31994 TAGGTATTGAGACACTAGGTGGTGTAATGACTAAACTTATTGATGCTAACACTACTATTC 31935 Query 475965 CATGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCC 476024 | || || ||| | || || || || | ||||| |||||| ||||| || | Sbjct 31934 CTTGTAAGAAAGCTGAAACTTTCTCAACAGCGGCAGATAACCAAACAGAGGTAACAATTC 31875 Query 476025 AAATCTTTGAAGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATC 476084 | | || ||||||||||| | | | || | ||||| | |||| | ||| || | Sbjct 31874 ATGTGCTTCAAGGTGAAAGACCAATGGCCAACCAAAATAAAACTATTGGTAATTTCAACC 31815 Query 476085 TTGAAGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 | ||||||| ||||||| | | || |||||||||||||||| | ||||||||||| Sbjct 31814 TAACAGGTATTGCTCCTGCACAGCGTGGTATTCCTCAAATTGAAGTAAGTTTTGATATTG 31755 Query 476145 ATGCAAATGGTATTCTTAATGTTACTGC 476172 |||| || ||||| | | |||| |||| Sbjct 31754 ATGCTAACGGTATCTTGAGTGTTTCTGC 31727 Score = 150 bits (166), Expect = 1e-30 Identities = 162/212 (76%), Gaps = 2/212 (1%) Strand=Plus/Minus Query 474663 AACAAATTTCTTCAATGGTTTTAGCCAAAATGAAACAAACCGCGAGCTCA-TATCTTGGA 474721 || || ||||| ||||||| | |||||||| ||||| || || | ||| | ||| Sbjct 32843 AAGAACTTTCTGCAATGGTACTTCAAAAAATGAAGCAAACTGC-AGAAGACTATTTAGGA 32785 Query 474722 CAAGAAGTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAA 474781 ||||||||||| || || |||||||| ||||| |||||||| || || ||||||||| Sbjct 32784 CAAGAAGTAACAGAGGCTGTAATTACAGTTCCTGCATATTTCTCAGACTCACAACGTCAA 32725 Query 474782 GCAACTAAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCA 474841 || || ||||| || || ||||||||||||| | || |||||||||||| ||||| Sbjct 32724 GCTACAAAAGAGGCTGGTCAAATTGCAGGTCTTGAGGTGAAACGTATTATTAACGAACCT 32665 Query 474842 ACAGCAGCCGCACTTGCTTATGGTCTTGATAA 474873 || || || || |||||||| ||| |||| || Sbjct 32664 ACTGCTGCTGCTCTTGCTTACGGTGTTGAAAA 32633 >seq3881 Length=138185 Score = 102 bits (112), Expect = 5e-16 Identities = 106/139 (76%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 474735 ATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATG 474794 |||| || || ||||| ||||| ||||| ||||| || ||| | || |||||||| |||| Sbjct 63912 ATGCTGTGATCACTGTGCCAGCCTATTTCAATGACTCACAATGACAGGCAACTAAGGATG 63971 Query 474795 CGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCAC 474854 | || ||||||||||| ||||| || | ||||| ||||| || ||||| || || Sbjct 63972 CAGGCGTGATTGCAGGTCTCAATGTGCTAAGAATTATCAATGAGCCCACAGCTGCTGCCA 64031 Query 474855 TTGCTTATGGTCTTGATAA 474873 |||| ||||| | ||||| Sbjct 64032 TTGCCTATGGCTTAGATAA 64050 >seq11635 Length=64061 Score = 100 bits (110), Expect = 2e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 ||||| | || ||||||||||||||||| ||||| | ||| || ||||||| Sbjct 57642 CCATCTCTCCCAGCTCTACCTATTTCTTGGTAATAGCTTTCAATGCTTTTAGGCATATTG 57583 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 |||||||| || ||| |||| |||||||| ||||||||||||||| |||||||| ||| Sbjct 57582 TAATGTATAACCCATCTTACATTTGATTTATCAATACCCATTCCAAAAGCAATTGTAGCA 57523 Score = 100 bits (110), Expect = 2e-15 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 627769 CCATCACGTCCTGCTCTACCTATTTCTTGATAATAACCTTCGATATTTTTAGGTGCGCCA 627828 ||||| | || ||||||||||||||||| ||||| | ||| || ||||||| Sbjct 58055 CCATCTCTCCCAGCTCTACCTATTTCTTGGTAATAGCTTTCAATGCTTTTAGGCATATTG 57996 Query 627829 TAATGTATTACTGCTCTCACATCTGATTTATTAATACCCATTCCAAATGCAATTGTTGCA 627888 |||||||| || ||| |||| |||||||| ||||||||||||||| |||||||| ||| Sbjct 57995 TAATGTATAACCCATCTTACATTTGATTTATCAATACCCATTCCAAAAGCAATTGTAGCA 57936 >seq13417 Length=55113 Score = 86.0 bits (94), Expect = 4e-11 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 476035 AGGTGAAAGAAAATTCACTAAAGATAATAACAAACTTGGAACTTTTAATCTTGAAGGTAT 476094 ||||||| || | || ||||| ||| || || ||||||||| |||| || || Sbjct 18745 AGGTGAACGACCCCTGACGAAAGACAATCACCTTCTGGGAACTTTTGATCTGACGGGAAT 18686 Query 476095 TCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCAAATGG 476154 |||||||||||| | || ||||| || |||||||| || ||||| || |||| ||||| Sbjct 18685 TCCTCCTGCTCCTCGTGGGGTTCCACAGATTGAAGTCACCTTTGAGATAGATGTGAATGG 18626 Query 476155 TATTCTT 476161 |||||| Sbjct 18625 CATTCTT 18619 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3264199758790256