Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq12380 311 1e-79 seq8864 172 6e-38 seq19885 96.9 4e-15 >seq12380 Length=54645 Score = 311 bits (344), Expect = 1e-79 Identities = 660/982 (67%), Gaps = 5/982 (1%) Strand=Plus/Plus Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111 |||||| || |||| ||| |||| ||| || | ||| | ||| ||| || ||||| || Sbjct 11241 CAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTGTGTCAAACTTATTGGC 11300 Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171 |||| ||||| | | | || ||||||| || ||| || | || || | ||| || Sbjct 11301 AAACAAGTGGTGTG---TACGAAGAATCCAGTTCAAGTCACCTGCTCCAAAAATGCACAC 11357 Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231 || || | ||| || ||| |||| || ||||| | || || || | | ||||||||| Sbjct 11358 AGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 11417 Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291 ||||||||||||| |||||||| || || || |||||||| || |||| || || | Sbjct 11418 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAGACATGTCATACTTAGA 11477 Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351 ||| || | | || || || | || || | || | |||||||| || | || Sbjct 11478 GCTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATAGTGGCCCAGAGATACTC 11537 Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411 || |||||||| ||||| || | ||| ||||| |||| |||| || | || Sbjct 11538 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCGTTCTTGAG 11597 Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471 || | || || || || || ||||| || || ||||| || || | || | Sbjct 11598 CACATACCCTACATACTTCCTAGTGACCACAAAATAGGCACTGCCTGAAAAGAGAGGCGT 11657 Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530 | ||| || ||| ||| ||| || ||||| | || | ||| | ||| | | Sbjct 11658 TTCAAGAGGGGG-GTGCATTTTGTCAGTCCCTGTGTTGGTCAGCTTTCCGTCCACAACTG 11716 Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590 | |||| |||||||| | | || | | |||||| || || |||||| ||| Sbjct 11717 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGATTGT 11776 Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650 | | || | || || |||| | |||| || || ||||| || || | ||||| | Sbjct 11777 TTTCGCCCATTAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 11836 Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710 | ||||||| | || |||| ||||||||| | || |||| | |||||| || Sbjct 11837 CCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTATAGAGGTCCTGCA 11896 Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770 | || || | || ||||| || || ||||| || |||||||| || |||| || | || Sbjct 11897 TACAGTTGAGGTCAGCCTGGACCCGACTCCATGATGCGTACACCACACTCTCCAGCTGAC 11956 Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCT 160830 ||| ||||||||||||| |||||| || | || || | ||| || ||||| | Sbjct 11957 TGGTCACAAAGACGTTACTGAAACAGGATGCAATGCCAATCACTGCAGCCAAGAAGGAAT 12016 Query 160831 TATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGA 160890 || | ||| ||||||||| | |||||| | ||||||||| ||||||||||| | Sbjct 12017 CCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCA 12076 Query 160891 GCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACT 160950 | | ||| || ||||| || || || ||||| | ||| ||||| || ||||| ||||||| Sbjct 12077 GGAGCCTGTCAAACATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAACT 12136 Query 160951 CGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCAC 161010 | | ||| || ||| |||| | | || || ||| ||||||| ||| || || Sbjct 12137 CTGCCTCTTCTTTACTAAGGGGTTCTACGATATATTTGCGCCTCTTGATGAAAGAACTAC 12196 Query 161011 AATCCCGCGTCATGTTGATATA 161032 |||| | |||||||| ||||| Sbjct 12197 AATCACTTGTCATGTTTATATA 12218 >seq8864 Length=76667 Score = 172 bits (190), Expect = 6e-38 Identities = 222/305 (73%), Gaps = 1/305 (0%) Strand=Plus/Minus Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229 ||| || ||||| || || || || || |||||||||||| || | || || || || || Sbjct 28303 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCATC 28244 Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289 || |||||||||||| || || | |||||||| |||| |||| || || |||||||| Sbjct 28243 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCAC 28184 Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349 || | ||| | ||| || | ||||| || ||||||| |||||||||| ||||||| Sbjct 28183 CTTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTT 28124 Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409 |||||||| ||| | || |||||||| || || ||||| || || | | || Sbjct 28123 TTCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTG 28064 Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469 ||| || |||| | ||| | || ||||||||||| || |||||||| || || | Sbjct 28063 CAGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCACTTTTTCATCTTGGGTCACCA- 28005 Query 168470 CTGTC 168474 ||||| Sbjct 28004 CTGTC 28000 Score = 120 bits (132), Expect = 4e-22 Identities = 159/220 (72%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942 ||||||| | || || ||||| |||| ||||| |||| ||| |||||||| || Sbjct 30908 GTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCC---TTC 30852 Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002 || | |||||||| || ||||| || || | | ||| || || ||| || || ||| Sbjct 30851 CCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGATGTGGTCCCGTTG 30792 Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062 | ||| | || ||| || ||||||||||||||||| || | || |||||| | || Sbjct 30791 GGGTGTGAGACAATTTCAGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGATC 30732 Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102 ||||| || || || || | |||||||| |||||||||| Sbjct 30731 ACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTA 30692 >seq19885 Length=27567 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291 ||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || | Sbjct 9039 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 8980 Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351 ||||| ||||| ||||| |||| || || || || | ||| | ||||| | | || Sbjct 8979 GGAATATAGTTCTCATAGTTTTCCCTAGATGGCCCCAGAACGACAGGTACAGAGCCAGCC 8920 Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAA 176407 | || | ||||| |||||||| |||||| || |||| ||||||||||| || Sbjct 8919 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAA 8864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 576549827754720