Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_020474.2
Length=180421
Score E
Sequences producing significant alignments: (Bits) Value
seq12380 311 1e-79
seq8864 172 6e-38
seq19885 96.9 4e-15
>seq12380
Length=54645
Score = 311 bits (344), Expect = 1e-79
Identities = 660/982 (67%), Gaps = 5/982 (1%)
Strand=Plus/Plus
Query 160052 CAGATGTTCGTCCAGACATTGGACGGCGAACACGTCAACGTCTTCGTCGAATTTATTTGC 160111
|||||| || |||| ||| |||| ||| || | ||| | ||| ||| || ||||| ||
Sbjct 11241 CAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTGTGTCAAACTTATTGGC 11300
Query 160112 GAACAGATGGTGAGCGTTCTGTAGGATCCAGTGCACGTCTCCGGACCCGAACACGCAGAC 160171
|||| ||||| | | | || ||||||| || ||| || | || || | ||| ||
Sbjct 11301 AAACAAGTGGTGTG---TACGAAGAATCCAGTTCAAGTCACCTGCTCCAAAAATGCACAC 11357
Query 160172 GGAACGTATGTGCACGCCGTTGCAAGGCGGGTACAGAGCTCCTTTCGCCACGTCACCTTC 160231
|| || | ||| || ||| |||| || ||||| | || || || | | |||||||||
Sbjct 11358 AGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCTTGGAAATGTCACCTTC 11417
Query 160232 GTAGTACTGCCACTTCACAAACCTGGCTATCGCCTGCATGTCGGAGGTGTCGTATTTGTA 160291
||||||||||||| |||||||| || || || |||||||| || |||| || || |
Sbjct 11418 AAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAGACATGTCATACTTAGA 11477
Query 160292 CATCAGGGGAACGGCACCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTC 160351
||| || | | || || || | || || | || | |||||||| || | ||
Sbjct 11478 GCTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATAGTGGCCCAGAGATACTC 11537
Query 160352 GTCGGGGCTGTACGTGTCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAG 160411
|| |||||||| ||||| || | ||| ||||| |||| |||| || | ||
Sbjct 11538 ATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGGATTTTTTCGTTCTTGAG 11597
Query 160412 AACGTGAGTAACGTAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTAT 160471
|| | || || || || || ||||| || || ||||| || || | || |
Sbjct 11598 CACATACCCTACATACTTCCTAGTGACCACAAAATAGGCACTGCCTGAAAAGAGAGGCGT 11657
Query 160472 GGGTATAGGCGGCGTGTCTTT-GTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCG 160530
| ||| || ||| ||| ||| || ||||| | || | ||| | ||| | |
Sbjct 11658 TTCAAGAGGGGG-GTGCATTTTGTCAGTCCCTGTGTTGGTCAGCTTTCCGTCCACAACTG 11716
Query 160531 CGTGTCGCTTCTTCCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGT 160590
| |||| |||||||| | | || | | |||||| || || |||||| |||
Sbjct 11717 TATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGGCATTTTCTCAGTTTCTAGATTGT 11776
Query 160591 TGGCACCGTCGAGCGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGT 160650
| | || | || || |||| | |||| || || ||||| || || | ||||| |
Sbjct 11777 TTTCGCCCATTAATGACTTGAGCTTCCTGACAATTTCCAGGTTGGTTTTAATAGGAAAAT 11836
Query 160651 CGGTACCGCACAAGTTTATCACGTACTTCCATTTCGCGCTCAGGTCGTGCAGGTCCCTCA 160710
| ||||||| | || |||| ||||||||| | || |||| | |||||| ||
Sbjct 11837 CCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGCACTCATTCTATAGAGGTCCTGCA 11896
Query 160711 TGCAATTAATATCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTAC 160770
| || || | || ||||| || || ||||| || |||||||| || |||| || | ||
Sbjct 11897 TACAGTTGAGGTCAGCCTGGACCCGACTCCATGATGCGTACACCACACTCTCCAGCTGAC 11956
Query 160771 TGGCCACAAAGACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCT 160830
||| ||||||||||||| |||||| || | || || | ||| || ||||| |
Sbjct 11957 TGGTCACAAAGACGTTACTGAAACAGGATGCAATGCCAATCACTGCAGCCAAGAAGGAAT 12016
Query 160831 TATCCGCCTTTCGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGA 160890
|| | ||| ||||||||| | |||||| | ||||||||| ||||||||||| |
Sbjct 12017 CCTCTGATTTTTTGTCCACGTGAATGCAATAGAAATTCTGAGGCATATAGATGGCCCTCA 12076
Query 160891 GCAACCTCTCGAACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACT 160950
| | ||| || ||||| || || || ||||| | ||| ||||| || ||||| |||||||
Sbjct 12077 GGAGCCTGTCAAACATTTCAATTTTGTGATGAACCACTATAGAATATGCTATTGGAAACT 12136
Query 160951 CGGTCTCCTCGCGACTCAGGGACCCGGTCAGGTACTTTCGCGTCTTGATAAAATAATCAC 161010
| | ||| || ||| |||| | | || || ||| ||||||| ||| || ||
Sbjct 12137 CTGCCTCTTCTTTACTAAGGGGTTCTACGATATATTTGCGCCTCTTGATGAAAGAACTAC 12196
Query 161011 AATCCCGCGTCATGTTGATATA 161032
|||| | |||||||| |||||
Sbjct 12197 AATCACTTGTCATGTTTATATA 12218
>seq8864
Length=76667
Score = 172 bits (190), Expect = 6e-38
Identities = 222/305 (73%), Gaps = 1/305 (0%)
Strand=Plus/Minus
Query 168170 TCCAGAAATCTTGCCTGATCCGAACGTGTTGAAGAGGCACATGAAGCAGCCTTCGTCCTC 168229
||| || ||||| || || || || || |||||||||||| || | || || || || ||
Sbjct 28303 TCCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCATC 28244
Query 168230 CACGGTGGTATTCCAAAATGTTAGCGTTGAGTTTCGGAGGCCCAACTGCGTTATGTTCAC 168289
|| |||||||||||| || || | |||||||| |||| |||| || || ||||||||
Sbjct 28243 CAGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCAC 28184
Query 168290 ACGATCTTTATAAGGAGGTTGAACTACAACGCCGTGGTTCTCGCTGAAGGTGGCCATGTT 168349
|| | ||| | ||| || | ||||| || ||||||| |||||||||| |||||||
Sbjct 28183 CTTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTT 28124
Query 168350 CTCCGGGCTGGTGGCCTTTATCTTCTGCCAGGTTACTATCAGAACCTCTTTATCGGTCTG 168409
|||||||| ||| | || |||||||| || || ||||| || || | | ||
Sbjct 28123 TTCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTG 28064
Query 168410 CAGGGAACATCTCAGCGAAGCCGGAGTGTTCAGCAGTTCTCGCTCATCTTGAGTTACGAC 168469
||| || |||| | ||| | || ||||||||||| || |||||||| || || |
Sbjct 28063 CAGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCACTTTTTCATCTTGGGTCACCA- 28005
Query 168470 CTGTC 168474
|||||
Sbjct 28004 CTGTC 28000
Score = 120 bits (132), Expect = 4e-22
Identities = 159/220 (72%), Gaps = 3/220 (1%)
Strand=Plus/Minus
Query 167883 GTTTGCCGTATGTCCGTTACAGTTCCCAAATGTAGTACCTTGCATATCACCTCTCCGTTT 167942
||||||| | || || ||||| |||| ||||| |||| ||| |||||||| ||
Sbjct 30908 GTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCC---TTC 30852
Query 167943 CCTACTTGACTCTTTGGATCTTTTACTTGTAAAATGCTAGTTACACTTGTAGTTCCATTG 168002
|| | |||||||| || ||||| || || | | ||| || || ||| || || |||
Sbjct 30851 CCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGATGTGGTCCCGTTG 30792
Query 168003 CGATGTAAAACGGTTTTCGTGCTGTTCTCAATCCCTGATCCTGCCACCTTCCAGAATATT 168062
| ||| | || ||| || ||||||||||||||||| || | || |||||| | ||
Sbjct 30791 GGGTGTGAGACAATTTCAGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAGATC 30732
Query 168063 ACAGGAGCGGGTCGTGCTGTAGCAGAGCAGGTAATATTTA 168102
||||| || || || || | |||||||| ||||||||||
Sbjct 30731 ACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTA 30692
>seq19885
Length=27567
Score = 96.9 bits (106), Expect = 4e-15
Identities = 127/176 (72%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 176232 AGATATTTTACTAGGTCACGTGGCGAGTCATAATCATTAACATGTATAAATGCGTGTGGT 176291
||||| ||| |||| |||| || |||| |||||| | ||||| || |||| | || |
Sbjct 9039 AGATACTTTGCTAGCTCACTGGGAGAGTTATAATCTTCCACATGAATGAATGAATCTGCT 8980
Query 176292 GGAATGTAGTTTTCATAATTTTGTCTGGAGGGTCCTAAAACTATTGGTACGGTACGTGCT 176351
||||| ||||| ||||| |||| || || || || | ||| | ||||| | | ||
Sbjct 8979 GGAATATAGTTCTCATAGTTTTCCCTAGATGGCCCCAGAACGACAGGTACAGAGCCAGCC 8920
Query 176352 AATAATGAGCGGTAGATCTTTTCTGAGATGTAGTCAGTGTGAATTGAGTTTTCAAA 176407
| || | ||||| |||||||| |||||| || |||| ||||||||||| ||
Sbjct 8919 AGAAAAGCATTGTAGAGCTTTTCTGTGATGTAATCTTTGTGGATTGAGTTTTCGAA 8864
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 576549827754720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |