Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq22040 150 2e-31 >seq22040 Length=22008 Score = 150 bits (166), Expect = 2e-31 Identities = 179/240 (75%), Gaps = 2/240 (1%) Strand=Plus/Plus Query 138174 TGTTTTGCTACACCAATAGGACCTACGCCAGGACCTCCACCTCCATGTGGAATACAGAAT 138233 ||||||||||| | |||||||||||| ||||| || ||||| ||||| |||||| || Sbjct 17935 TGTTTTGCTACGCAAATAGGACCTACACCAGGGCCACCACCACCATGAGGAATAGCAAAG 17994 Query 138234 GTCTTATGTAAATTTAGATGACATACATCTGCACC-ATAGTCACATGGTTTTGCTAGACC 138292 |||||||||| || || |||||||| ||||| || ||| || || |||| || || Sbjct 17995 GTCTTATGTAGGTTAAGGTGACATACGTCTGCTCCGATAAAGCCA-GGATTTGTAAGTCC 18053 Query 138293 TACCTGTGCATTTAGATTTGCACCATCGAGATATACCTGACCACCATTGTCATGAACGAT 138352 ||| || ||||| | |||||||||||| | || || || | ||| || || | | Sbjct 18054 TACTTGGGCATTCATATTTGCACCATCCATGTACACTTGTGCTCCAGCTTCGTGTATTAA 18113 Query 138353 CTTACATATCTGTCTGATGTTTGTTTCAAATACACCATGAGTCGATGGATATGTAATCAT 138412 ||||| |||| | || || || ||||| | |||||| || |||||||| |||||||| Sbjct 18114 GTTACACATCTCGCGTATATTGGTCTCAAAAATACCATGTGTAGATGGATAAGTAATCAT 18173 Score = 116 bits (128), Expect = 4e-21 Identities = 161/223 (72%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 139859 CATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGTAATCC 139918 ||| ||||||||| | || ||||||||||||| || || ||| | || ||| | ||| Sbjct 19656 CATAGCCTCTGCTCCAGCTGTTGCTTCATCTAGTAATGAACAGTTGGATAGTGGAAGTCC 19715 Query 139919 TGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGAGATAT 139978 ||| | || | || ||||||| |||| | ||| || || | || || || |||| Sbjct 19716 TGTTAAATCAGAAATAGCCGTTTGGAAATTCATTAAGGCCTCGAGCCTACCTTGCGATAC 19775 Query 139979 CTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTTCGCTG 140038 || ||||||| |||||||| || || |||||| |||||| | | || ||||| || Sbjct 19776 TTCTCCTTGATACGGAGTGTATGACGTATACCAAACAGGATTTTGGAATACATTTCG-TG 19834 Query 140039 T-ATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTAT 140080 | || |||| || ||||| |||||||| | |||||||| || Sbjct 19835 TAATAACTGCCGGAGTAATTGTTCCATACCAACCTTGACCAAT 19877 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578326964505440