Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_020851.1
Length=208007
Score E
Sequences producing significant alignments: (Bits) Value
seq34498 161 1e-34
seq557 91.5 2e-13
seq7612 87.8 2e-12
>seq34498
Length=9444
Score = 161 bits (178), Expect = 1e-34
Identities = 271/387 (70%), Gaps = 4/387 (1%)
Strand=Plus/Plus
Query 47944 GTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATA 48003
|| || ||||| ||||||||||| || || | | | | ||| || ||||| ||||||
Sbjct 8215 GTTATTTTACGCGTTACAAAAGTCTCGCCCCTCCGTTCACTTTCGTGGTTAAACAGAATA 8274
Query 48004 CCACT-ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACT-ATCCAGTACCCAT 48061
||| | ||| ||| |||| ||||| || || ||||| |||| | ||||| | ||||
Sbjct 8275 CCATTCACA-GCAAACATCCCGTAACTCTCTCGGTAGTT-TTTAGTAATCCAAAAACCAT 8332
Query 48062 AGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAG 48121
| | || || ||| |||| |||||||| ||||| ||||| || || || |||||||
Sbjct 8333 ACTGCTTCGCCACAGCATAGGGAGAACGGGGATAAAAAGGGGTAGTTTCACTCTGTGGCA 8392
Query 48122 TCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTT 48181
||| |||||||||||||| || || || || || || || || || | |
Sbjct 8393 CCTCCTGCACCTTACCATACAGCTCCGATGTAGAGGCCTGGTATATGCGTGTTTGGTGCT 8452
Query 48182 CCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGAC 48241
||| | | | | ||| || ||||| |||| | || || || | ||||||||||
Sbjct 8453 CCAACCCCAAAATACGAACAGCCTCTAGCAGACGCAACGTACCCAAAGCATCTGTCTCTG 8512
Query 48242 CAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAA 48301
| ||||| ||||||| || || || ||||||||||| ||||| || | | ||| ||||
Sbjct 8513 CTGTATATTCGGGCACATCGAAAGAGACCTTTACATGGCTCTGAGCAGCTAAATTGTAAA 8572
Query 48302 TCTCATCTGGTTGAACCTGCTGAATAA 48328
| || | || | | |||||| ||||
Sbjct 8573 TTTCGTGCGGACGGATCTGCTGTATAA 8599
Score = 120 bits (132), Expect = 4e-22
Identities = 312/482 (65%), Gaps = 33/482 (7%)
Strand=Plus/Plus
Query 48073 ACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACC 48132
||| |||| |||||||| ||||| ||||| || || || ||||||| ||| ||||||
Sbjct 8772 ACAGCATAGGGAGAACGGGGATAAAAAGGGGTAGTTTCACTCTGTGGCACCTCCTGCACC 8831
Query 48133 TTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGC 48192
|||||||| || || || || || || || || || | |||| | | |
Sbjct 8832 TTACCATACAGCTCCGATGTAGAGGCCTGGTATATGCGTGTTTGGTGCTCCAACCCCAAA 8891
Query 48193 AAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCG 48252
| ||| || ||||| |||| | || || || | |||||||||| | ||||| |||
Sbjct 8892 ATACGAACAGCCTCTAGCAGACGCAACGTACCCAAAGCATCTGTCTCTGCTGTATATTCG 8951
Query 48253 GGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGT 48312
|||| || || || ||||||||||| ||||| || | | ||| ||||| || | ||
Sbjct 8952 GGCACATCGAAAGAGACCTTTACATGGCTCTGAGCAGCTAAATTGTAAATTTCGTGCGGA 9011
Query 48313 TGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAAT 48372
| | |||||| |||| | | ||| | || || | || |||||||||||
Sbjct 9012 CGGATCTGCTGTATAATGCGTATCAAAGAGCTGCTATCGGTCATATCGCCATAATGCAAG 9071
Query 48373 TTTA-------------ATTGAT------CA--------------TAAATGTGATCAATT 48399
|||| || || || || | ||| || ||
Sbjct 9072 TTTACCAAACGCTTCTGCTTCATGTCGCGCACCCACTCGTCTAGGTACAGGTGCTCTATA 9131
Query 48400 CTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCA 48459
| | ||| |||| | | || | |||||| | ||| || || ||||| || ||||| |||
Sbjct 9132 CGACCTGTGTTAAATGAGGAGGACCGACGAATAATGCCGTGCACCTCGTAACCCTTCTCA 9191
Query 48460 AGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACT 48519
| | |||||||| | || ||||| ||||| || ||||| || || |||||||| |||
Sbjct 9192 ATCAATAGTTCTGCAAGATACGAACCGTCTTGACCCGTAATTCCTGTTATTAAAGCCACT 9251
Query 48520 TT 48521
||
Sbjct 9252 TT 9253
>seq557
Length=314288
Score = 91.5 bits (100), Expect = 2e-13
Identities = 76/93 (82%), Gaps = 0/93 (0%)
Strand=Plus/Plus
Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133
||||||| || || || ||||||||||| |||||||| |||| || |||||||||| |
Sbjct 285483 CACCATATGGTGACCGAGGATAGAAAGGAGTGGTCTCCTTCTGGGGTATCTCTTGCACTT 285542
Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166
| ||||| |||||||| || || ||||| ||||
Sbjct 285543 TCCCATACAGTTCACTTGTTGAGGCTTGGTAGA 285575
>seq7612
Length=87096
Score = 87.8 bits (96), Expect = 2e-12
Identities = 67/78 (86%), Gaps = 1/78 (1%)
Strand=Plus/Minus
Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799
|||||||||||||| ||||||||||||| ||| | ||||| ||||| |||||| ||| |
Sbjct 72952 TGGAGAATAACGGATTCGAACCGTTGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGC 72893
Query 53800 TGAGCTAATTCCCCAATC 53817
||||||||| ||||| ||
Sbjct 72892 TGAGCTAATCCCCCATTC 72875
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 664722659419040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |