Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_020851.1 Length=208007 Score E Sequences producing significant alignments: (Bits) Value seq34498 161 1e-34 seq557 91.5 2e-13 seq7612 87.8 2e-12 >seq34498 Length=9444 Score = 161 bits (178), Expect = 1e-34 Identities = 271/387 (70%), Gaps = 4/387 (1%) Strand=Plus/Plus Query 47944 GTAATCTTACGAGTTACAAAAGTTTCACCACGTCTTGGAGATTCATGATTAAAAAGAATA 48003 || || ||||| ||||||||||| || || | | | | ||| || ||||| |||||| Sbjct 8215 GTTATTTTACGCGTTACAAAAGTCTCGCCCCTCCGTTCACTTTCGTGGTTAAACAGAATA 8274 Query 48004 CCACT-ACAGGCATACATTCCGTATGATTCACGATAGTTCTTTACT-ATCCAGTACCCAT 48061 ||| | ||| ||| |||| ||||| || || ||||| |||| | ||||| | |||| Sbjct 8275 CCATTCACA-GCAAACATCCCGTAACTCTCTCGGTAGTT-TTTAGTAATCCAAAAACCAT 8332 Query 48062 AGAGTTTTGCAACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAG 48121 | | || || ||| |||| |||||||| ||||| ||||| || || || ||||||| Sbjct 8333 ACTGCTTCGCCACAGCATAGGGAGAACGGGGATAAAAAGGGGTAGTTTCACTCTGTGGCA 8392 Query 48122 TCTCTTGCACCTTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTT 48181 ||| |||||||||||||| || || || || || || || || || | | Sbjct 8393 CCTCCTGCACCTTACCATACAGCTCCGATGTAGAGGCCTGGTATATGCGTGTTTGGTGCT 8452 Query 48182 CCATCTCAAGCAAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGAC 48241 ||| | | | | ||| || ||||| |||| | || || || | |||||||||| Sbjct 8453 CCAACCCCAAAATACGAACAGCCTCTAGCAGACGCAACGTACCCAAAGCATCTGTCTCTG 8512 Query 48242 CAGTATACTCGGGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAA 48301 | ||||| ||||||| || || || ||||||||||| ||||| || | | ||| |||| Sbjct 8513 CTGTATATTCGGGCACATCGAAAGAGACCTTTACATGGCTCTGAGCAGCTAAATTGTAAA 8572 Query 48302 TCTCATCTGGTTGAACCTGCTGAATAA 48328 | || | || | | |||||| |||| Sbjct 8573 TTTCGTGCGGACGGATCTGCTGTATAA 8599 Score = 120 bits (132), Expect = 4e-22 Identities = 312/482 (65%), Gaps = 33/482 (7%) Strand=Plus/Plus Query 48073 ACACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACC 48132 ||| |||| |||||||| ||||| ||||| || || || ||||||| ||| |||||| Sbjct 8772 ACAGCATAGGGAGAACGGGGATAAAAAGGGGTAGTTTCACTCTGTGGCACCTCCTGCACC 8831 Query 48133 TTACCATAAAGTTCACTGGTGGATGCTTGATAGATACGAACCCTATCTTCCATCTCAAGC 48192 |||||||| || || || || || || || || || | |||| | | | Sbjct 8832 TTACCATACAGCTCCGATGTAGAGGCCTGGTATATGCGTGTTTGGTGCTCCAACCCCAAA 8891 Query 48193 AAACGGACTGCCTCAAGCACTCTCAGGGTGCCTATGGCATCTGTCTGACCAGTATACTCG 48252 | ||| || ||||| |||| | || || || | |||||||||| | ||||| ||| Sbjct 8892 ATACGAACAGCCTCTAGCAGACGCAACGTACCCAAAGCATCTGTCTCTGCTGTATATTCG 8951 Query 48253 GGCATCTCAAACGAAACCTTTACATGACTCTGTGCCCCAAGATTATAAATCTCATCTGGT 48312 |||| || || || ||||||||||| ||||| || | | ||| ||||| || | || Sbjct 8952 GGCACATCGAAAGAGACCTTTACATGGCTCTGAGCAGCTAAATTGTAAATTTCGTGCGGA 9011 Query 48313 TGAACCTGCTGAATAACCCTCACTAAATTTGTAGAGTCTGTTAAGTCTCCATAATGCAAT 48372 | | |||||| |||| | | ||| | || || | || ||||||||||| Sbjct 9012 CGGATCTGCTGTATAATGCGTATCAAAGAGCTGCTATCGGTCATATCGCCATAATGCAAG 9071 Query 48373 TTTA-------------ATTGAT------CA--------------TAAATGTGATCAATT 48399 |||| || || || || | ||| || || Sbjct 9072 TTTACCAAACGCTTCTGCTTCATGTCGCGCACCCACTCGTCTAGGTACAGGTGCTCTATA 9131 Query 48400 CTATGTGTATTAATTAAAGAAGCCCGACGGACAATACCATGAACCTCATACCCCTTTTCA 48459 | | ||| |||| | | || | |||||| | ||| || || ||||| || ||||| ||| Sbjct 9132 CGACCTGTGTTAAATGAGGAGGACCGACGAATAATGCCGTGCACCTCGTAACCCTTCTCA 9191 Query 48460 AGAAGAAGTTCTGCTAAGTATGAACCATCTTGTCCTGTAATACCAGTGATTAAAGCAACT 48519 | | |||||||| | || ||||| ||||| || ||||| || || |||||||| ||| Sbjct 9192 ATCAATAGTTCTGCAAGATACGAACCGTCTTGACCCGTAATTCCTGTTATTAAAGCCACT 9251 Query 48520 TT 48521 || Sbjct 9252 TT 9253 >seq557 Length=314288 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 48074 CACCATAAGGAGAACGTGGATAGAAAGGTGTGGTCTCTGTCTGTGGAGTCTCTTGCACCT 48133 ||||||| || || || ||||||||||| |||||||| |||| || |||||||||| | Sbjct 285483 CACCATATGGTGACCGAGGATAGAAAGGAGTGGTCTCCTTCTGGGGTATCTCTTGCACTT 285542 Query 48134 TACCATAAAGTTCACTGGTGGATGCTTGATAGA 48166 | ||||| |||||||| || || ||||| |||| Sbjct 285543 TCCCATACAGTTCACTTGTTGAGGCTTGGTAGA 285575 >seq7612 Length=87096 Score = 87.8 bits (96), Expect = 2e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 53741 TGGAGAATAACGGACTCGAACCGTTGACATCCTACTTGCAAAGCAGGCGCTCTA-CCAAC 53799 |||||||||||||| ||||||||||||| ||| | ||||| ||||| |||||| ||| | Sbjct 72952 TGGAGAATAACGGATTCGAACCGTTGACCCCCTGCGTGCAAGGCAGGTGCTCTAGCCAGC 72893 Query 53800 TGAGCTAATTCCCCAATC 53817 ||||||||| ||||| || Sbjct 72892 TGAGCTAATCCCCCATTC 72875 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 664722659419040