Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq11706 86.0 1e-11 >seq11706 Length=58367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 164/236 (69%), Gaps = 7/236 (3%) Strand=Plus/Minus Query 192309 ACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTC-TTTAGAGATATTATAATCAG 192367 || ||| | ||| | |||| | ||| |||| || ||| ||| || || || || |||| Sbjct 34776 ACTACCACAAAGTCTGAATATAAGATGAAAAGCAGACTCCTTTTGA-ATGTTGTAGTCAG 34718 Query 192368 ATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATC--TCT--GTTGATCA 192423 | || || || |||| |||| | || ||||||||||| | || ||| || | | Sbjct 34717 ACAAAGTATGTCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTA 34658 Query 192424 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGAT 192483 || || |||||||| ||||| || || || |||||||||| | | | || | | | Sbjct 34657 GGAGGAATTCCTTCCTTATCCTGAATCTTGGTTTTTACATT-TCTGTTGTGTCCAAGGGT 34599 Query 192484 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTTT 192539 || || || ||||| ||||| || || || | ||||| || || |||||||| || Sbjct 34598 TCAACCTCGAGAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTGCATCTT 34543 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 983309806462200