Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq2689 100 8e-16 seq14855 98.7 3e-15 >seq2689 Length=202606 Score = 100 bits (110), Expect = 8e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 302607 ACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATG 302666 |||||| || || || |||||||| ||||| || || ||||||| ||||| ||||| Sbjct 171103 ACCAGTCTCAGCAGTCTTGACAGCTGTGTCAATGAGCCCCTCACGACCCCCCATGGCATG 171044 Query 302667 GAAGAATAGCTCTTCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGC 302726 |||||| | ||| ||| || || | | ||||| |||| || || ||||| Sbjct 171043 GAAGAAGAACTCGGTGGGTGTGAGGCCAGCCAGGTAGGAGTTCTCCACAAAGCCACGACT 170984 Query 302727 CTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGG 302786 ||||||| || ||| |||| | || || ||||| |||| || || | || |||| Sbjct 170983 CTCGGGCCCATAGTCATCCTTGATGAAATGGGGCAGAGTCCGGTGCTTGAACCCAAATGG 170924 Query 302787 GATACGCTTTCCATCAACGTTCTGCTGTCC 302816 ||| ||||| || || || |||||||| || Sbjct 170923 GATCCGCTTGCCCTCCACATTCTGCTGCCC 170894 >seq14855 Length=43597 Score = 98.7 bits (108), Expect = 3e-15 Identities = 207/303 (68%), Gaps = 7/303 (2%) Strand=Plus/Plus Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 |||||||| ||| | ||| |||| || || ||||| |||| |||| | | || || | Sbjct 17278 ACCAACAGAATCTAATTCACCAATAAATATAACACAAGGAGCATTTGCTTTTGC--TTCC 17335 Query 289089 --AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAA 289146 ||| | | |||||||| | ||| | | ||| || |||| || ||||||| || Sbjct 17336 CTAAAAAGATTTCTTACACAGCTGGCTGCCACACCCACGAACATCTCATCAAATTCTGAT 17395 Query 289147 GCGGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTC 289206 | || ||| | | || | |||| ||||| ||||| || || || ||||||||| Sbjct 17396 CCAGAAACTAGTAA-AAGGGGACATCAGCTTCTCCTGCCACAGCTTGGGCAAGAAGTGTC 17454 Query 289207 TTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTT-TGCCCCAGCAGA 289265 || ||||| || |||||||| ||| |||| ||| ||||| | ||| | |||| | Sbjct 17455 TTTCCTGTCCCTGGTGGTCCAATTAAAAGAATTCCTTTTGGAAGTTTACTTACAAGCACA 17514 Query 289266 CTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCCTCAAGTTCATATTTTGCCTC 289325 || |||| | ||| | || || ||||| |||| ||||| | ||| | ||| || || Sbjct 17515 -GTAAATTTTTGAGGATTTTTCAAGAATTCAACAACTTCCTATAATTCTTGTTTAGCTTC 17573 Query 289326 ATC 289328 || Sbjct 17574 CTC 17576 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470068136888164