Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq6821 161 1e-33 seq3668 161 1e-33 seq9072 158 1e-32 seq14472 134 2e-25 seq16765 120 4e-21 seq6787 118 1e-20 seq12172 96.9 4e-14 seq469 91.5 2e-12 >seq6821 Length=94590 Score = 161 bits (178), Expect = 1e-33 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| |||||| ||| | |||||||||||| ||||||||||| || | || Sbjct 84995 GCTTGGCCAGCTCGCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 84936 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| ||||||| |||| | Sbjct 84935 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATGCGCTCGAAGA 84876 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | ||| |||||||| |||||||| Sbjct 84875 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTAGACGAGATGCCGGTGTCGGGGT 84816 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||||||||| ||||||||||| Sbjct 84815 GCACCTGCTTCAGCACCTTGTA 84794 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| ||| | |||||||||||| ||||||||||| || | || Sbjct 34011 GCTTGGCCAGCTCGCCAGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCGGGACGTGA 33952 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | ||| ||||||||| | |||||||| ||| |||||| |||| || |||| | Sbjct 33951 TGGTGGAGCGCTTGTTGTAATGCGCCAGGCGGGACGCCTCGCCCGCGATACGCTCGAAGA 33892 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||||| ||| | ||| || ||||| ||| |||| Sbjct 33891 TGTCGTTGACGAATGAGTTCATGATGCCCATGGCCTTAGACGAAATGCCGGTGTCCGGGT 33832 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 |||| ||||| ||||||||||| Sbjct 33831 GCACTTGCTTCAGCACCTTGTA 33810 >seq3668 Length=142850 Score = 161 bits (178), Expect = 1e-33 Identities = 166/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 98646 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 98705 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 98706 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 98765 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||||||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 98766 TGTCGTTGACAAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 98825 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||||||||| | | || |||||| Sbjct 98826 GGACCTGCTTGAGCACCTTGTACACGTACACCGAGTA 98862 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 109526 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 109585 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| |||| | Sbjct 109586 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 109645 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 | |||||||| ||||||||||| | ||| | |||| |||||||| |||||||| Sbjct 109646 TATCGTTGACGAACGAGTTCATAATGCCCATAGCCTTGGACGAGATGCCGGTGTCGGGGT 109705 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||||||||||||||| || Sbjct 109706 GGACCTGCTTGAGCACCTTATA 109727 Score = 131 bits (144), Expect = 2e-24 Identities = 151/202 (75%), Gaps = 1/202 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 95329 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 95270 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | ||||||| || |||||| ||||||| |||| | Sbjct 95269 TGGTCGAGCGCTTGTTGTAAAGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 95210 Query 1254463 TGTCGTTGA-CAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGG 1254521 ||||||||| ||||||| |||||| ||| | |||| |||||||| ||||||| Sbjct 95209 TGTCGTTGAGGAAACGAGATCATGATGCCCATGGCCTTGAACGAGATGCCGGTGTCGGGG 95150 Query 1254522 TGCACCTGCTTGAGCACCTTGT 1254543 || ||||||||||||||| ||| Sbjct 95149 TGGACCTGCTTGAGCACCGTGT 95128 >seq9072 Length=74950 Score = 158 bits (174), Expect = 1e-32 Identities = 165/217 (76%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 38088 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 38029 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 38028 TGGTCGAGCGCTTGTTATAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 37969 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 37968 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 37909 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||||||||| | | || |||||| Sbjct 37908 GGACCTGCTTGAGCACCTTGTACACGTACACCGAGTA 37872 Score = 149 bits (164), Expect = 8e-30 Identities = 163/217 (75%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 15447 GCTTGGCCAACTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 15506 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 15507 TGGTCGAGCGCTTGTTGTAATGCGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 15566 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| ||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 15567 TGTCTTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCAGTGTCGGGGT 15626 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | |||||||||||||||||||| | | || |||||| Sbjct 15627 GGACCTGCTTGAGCACCTTGTACACGTACACCGAGTA 15663 >seq14472 Length=45083 Score = 134 bits (148), Expect = 2e-25 Identities = 151/202 (75%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 5223 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 5282 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||| ||||| | || ||||| || |||||| ||||||| |||| | Sbjct 5283 TGGTCGAGCGTTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGTTCGAAGA 5342 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| ||||||||||||| ||| | |||| |||||||| |||||||| Sbjct 5343 TGTCGTTGACGAACGAGTTCATGATGCCCATGGCCTTGGACGAGATGCCGGTGTCGGGGT 5402 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | |||||||||||||| || || Sbjct 5403 GGACCTGCTTGAGCACTTTATA 5424 Score = 125 bits (138), Expect = 9e-23 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| ||| | | | |||||||||||| ||||||||||| | | | || Sbjct 24408 GCTTGGCCAGTTCTCCGGGGAGCAGCAGGCGCACGGCTGTCTGGATCTCCCTGGAGGTGA 24467 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| ||||||| |||| | Sbjct 24468 TGGTCGAGCGCTTGTTGTAATGAGCCAGGCGCGACGCCTCGCCCGCGATGCGCTCGAAGA 24527 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||||||||| || |||||||| | ||| | ||| |||||||| ||| |||| Sbjct 24528 TGTCGTTGACGAATGAGTTCATAATGCCCATGGCTTTGGACGAGATGCCGGTGTCCGGGT 24587 Query 1254523 GCACCTGCTTGAGCACCTTGTA 1254544 | ||||||||||| |||||||| Sbjct 24588 GGACCTGCTTGAGTACCTTGTA 24609 >seq16765 Length=36855 Score = 120 bits (132), Expect = 4e-21 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 11580 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCTCTGGAGGTGA 11639 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||||| | || ||||| || |||||| | ||||| |||| | Sbjct 11640 TGGTAGAGCGCTTGTTGTAATGGGCCAGGCGCGACGCCTCGCCCGCCATGCGCTCGAAGA 11699 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| ||||||||||||| ||| | ||| |||||||| ||| |||| Sbjct 11700 TGTCGTTGATGAACGAGTTCATGATGCCCATGGCCTTCGACGAGATGCCAGTGTCAGGGT 11759 Query 1254523 GCACCTGCTTGAGCACCTTGTAGA 1254546 | |||||||| ||||| || |||| Sbjct 11760 GGACCTGCTTCAGCACTTTATAGA 11783 >seq6787 Length=94921 Score = 118 bits (130), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 6/217 (3%) Strand=Plus/Minus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || |||||||||| || ||| | |||||||||||| ||||| ||||| | | | || Sbjct 28243 GCTTGGCCAGTTCCCCCGGCAGCAGCAGGCGCACGGCTGTCTGTATCTCCCTGGAGGTGA 28184 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||| | |||||||| || |||||| ||||||| |||| | Sbjct 28183 TGGTCGAGCGCTTGA---AATGCGCCAGGCGCGATGCCTCGCCCGCGATGCGCTCGAAGA 28127 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||| |||| ||||||||||||| ||| | |||| |||||||| |||| ||| Sbjct 28126 TGT---TGACGAACGAGTTCATGATGTCCATGGCCTTGGACGAGATGCCGGTGTCGAGGT 28070 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATGAACGACGAGTA 1254559 | ||||||||||||||||||| | | || |||||| Sbjct 28069 GGACCTGCTTGAGCACCTTGTGCACGTACACCGAGTA 28033 >seq12172 Length=55910 Score = 96.9 bits (106), Expect = 4e-14 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| || ||| ||| | |||||||||||| ||||||||||| | | | || Sbjct 31909 GCTTGGCCAGCTCCCCGGGCAGCAGCAGGCGCACGGCCGTCTGGATCTCCCTGGAGGTGA 31968 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || ||||||| | | |||| || || |||||| ||||||| |||| | Sbjct 31969 TGGTCGAGCGCTTGCTGTAATGCGTCAAGCGCGATGCCTCGCCCGCGATGCGCTCGAAGA 32028 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 |||| | || || || ||||||| ||| | ||| ||||| || ||| |||| Sbjct 32029 TGTCCGTTACGAAAGAATTCATGATACTCATGGCCTTTGAAGAGATTCCAGTGTCAGGGT 32088 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | || || || ||||||||||||||| Sbjct 32089 GAACTTGTTTTAGCACCTTGTAGATG 32114 >seq469 Length=333043 Score = 91.5 bits (100), Expect = 2e-12 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||| | |||||||| | |||| ||| || |||||| | || |||||| Sbjct 202478 GCTGCAAACTACTTAGACATCAAAGGTTTGCTTGATGTTACATGCAAGACCGTTGCCAAC 202419 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAA 1592295 ||||||||||| || | || |||||||| ||||||||||| || ||||| Sbjct 202418 ATGATCAAGGGGAAAACTCCTGAGGAGATTCGCAAGACCTTCAATATCAA 202369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6099525895228724