Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq4400 87.8 1e-12 >seq4400 Length=129001 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 110270 AAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCT 110329 |||||||| || || || || || | |||||||| ||||| ||| | || |||||| Sbjct 39894 AAAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 39953 Query 110330 GACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGAT 110389 |||||| ||| | || || ||||| || ||||||||| | || || Sbjct 39954 AGCGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGAC 40013 Query 110390 CAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTAC 110449 || || || || || | ||| || || ||||||||||||| | | || | | |||||| Sbjct 40014 CAGCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTAC 40073 Query 110450 AACATTCAAAAAGAATCTACGTTGCACATGGTG 110482 ||||| || ||||| || || ||||| | ||| Sbjct 40074 AACATCCAGAAAGAGTCGACCCTGCACCTCGTG 40106 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | |||||||| ||||| ||| | || |||||| | Sbjct 40353 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40412 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| || ||||||||| | || || || Sbjct 40413 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 40472 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||||||||||| | | || | | ||||||||| Sbjct 40473 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40532 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| || || ||||| ||||| Sbjct 40533 ATCCAGAAAGAGTCGACCCTGCACCTGGTG 40562 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || || || || || | |||||||| ||||| ||| | || |||||| | Sbjct 40125 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40184 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| ||| | || || ||||| || ||||||||| | || || || Sbjct 40185 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 40244 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || || || | ||| || || ||||||||||||| | | || | | ||||||||| Sbjct 40245 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40304 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGTG 110482 || || ||||| || || ||||| | ||| Sbjct 40305 ATCCAGAAAGAGTCGACCCTGCACCTCGTG 40334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412374817032596