Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq7134 143 2e-29 seq66 123 2e-23 seq4400 113 3e-20 seq7041 84.2 1e-11 >seq7134 Length=91468 Score = 143 bits (158), Expect = 2e-29 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||||| ||| | |||| ||| ||||| ||||| ||||| || Sbjct 87441 CCTCCCCTCAAGCGGAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 87382 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| ||||| |||||||| | ||||||||| | || Sbjct 87381 AGAGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 87322 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGA 34928 | |||||||| || | || || ||||| || || || | ||| ||| ||| | Sbjct 87321 ATGCCCTCCTTATCATGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCA 87264 Query 34929 CATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 | || | ||| |||||||| || || | |||||| || |||||||||||| Sbjct 87263 CCTCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 87214 Score = 136 bits (150), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||| ||||| ||||| || || |||| | || Sbjct 86743 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86684 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||||| | ||||||||| | || | ||||||||||| Sbjct 86683 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86624 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 86623 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 86566 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || | |||||| || |||||||||||| Sbjct 86565 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86530 Score = 136 bits (150), Expect = 3e-27 Identities = 161/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||||||||| ||||| ||||| || || |||| | || Sbjct 86971 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86912 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| ||||| ||||||| | ||||||||| | || | ||||||||||| Sbjct 86911 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86852 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 86851 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 86794 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || | |||||| || |||||||||||| Sbjct 86793 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86758 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||| ||||| ||||| ||||| || || |||| | || Sbjct 87199 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 87140 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || ||||| ||||||| | ||||||||| | || | ||||||||||| Sbjct 87139 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 87080 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || ||||| || || || | ||| ||| ||| || || | ||| ||| Sbjct 87079 TTGGATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATG 87022 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || || | |||||| || |||||||||||| Sbjct 87021 GTCTTACCGGTCAAGGTCTTCACGAAGATCTGCATG 86986 Score = 114 bits (126), Expect = 8e-21 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| ||| ||||| ||||| ||||| || || |||| | || Sbjct 86515 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86456 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| || || ||||| ||||||| | ||||||||| | || | ||||| || || Sbjct 86455 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTC 86396 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || || |||||| | || | ||| ||| ||| || || | ||| ||||| Sbjct 86395 TTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86336 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||| || || | || ||||| ||||||||||| Sbjct 86335 CTTACCGGTCAACGTTTTTACGAAGATCTGCAT 86303 >seq66 Length=542294 Score = 123 bits (136), Expect = 2e-23 Identities = 168/232 (72%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 ||||||||||| | ||||||| ||||| |||| || | ||| ||||| ||||| | Sbjct 261595 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAAC 261654 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || || | |||| |||| ||||| || || ||||||| | ||||||||| | || Sbjct 261655 AGAGTGTGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 261714 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTC 34926 | |||||||| || | || || ||||| || | ||||| ||| ||| ||| Sbjct 261715 ATGCCCTCCTTATCTTGGATCTTGGCCTTGAC--AT--TGTCGATGGTGTCACTGGGCTC 261770 Query 34927 GACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || || | ||| |||||||| || || |||||||| ||||||||||||||| Sbjct 261771 CACCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCATG 261822 >seq4400 Length=129001 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | ||| |||||||| | ||| ||| ||||| ||||| || || || Sbjct 40579 CCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40520 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | ||||||||| | || Sbjct 40519 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 40460 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | || ||| ||| || Sbjct 40459 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40400 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 40399 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || ||||| | ||| ||| ||||| ||||| || || || Sbjct 40123 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40064 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 40063 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 40004 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | || ||| ||| || Sbjct 40003 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 39944 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 39943 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 39897 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| | || || ||||| | ||| ||| ||||| ||||| || || || Sbjct 40351 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40292 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 || |||| |||| ||||| ||||| || || ||||| || | |||||||| | || Sbjct 40291 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 40232 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | || || || || | || || || ||| | || | || ||| ||| || Sbjct 40231 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40172 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || | ||| |||||||| || ||||||||||| || ||||||||||| Sbjct 40171 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 >seq7041 Length=99228 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/214 (69%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || |||| ||| | |||| || | |||||| | ||||| || || |||| |||| Sbjct 76594 AGCACCAAGTGCAGGGTGGACTTTTCCTGAATCCTGTAGTCTGAGAGAGTGCGGCCATCC 76535 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || | | || || || || ||||| | |||| ||| | || | || |||||||| Sbjct 76534 TCTATCCGTTTGCCTGCAAAAATCAGACACTGCTAGTCAGGTGGGATGCCTTCCTTGTCT 76475 Query 34886 TTTATTTTTTGTTTGACGGATGCTA--TCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | ||||| |||||| || || | | ||| || || || |||| |||||||| Sbjct 76474 TGGATTTTAGATTTGAC--ATTCTCAGTGGTGTCACTGAGCTTAACCTCAAGGGTTATGG 76417 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 |||| || || |||||||| ||| |||||||||| Sbjct 76416 TCTTGCCTGTCAGGGTCTTCACAGAGATCTGCAT 76383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325324552585868