Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq7134 95.1 9e-15 seq66 89.7 4e-13 seq4400 86.0 5e-12 >seq7134 Length=91468 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || ||||| || | ||||| ||||| || ||||| || || | Sbjct 87441 CCTCCCCTCAAGCGGAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGAC 87382 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || || || ||| | |||| || ||||| || || || Sbjct 87381 AGAGTGCGTCCATCTTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGG 87322 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || || || | || |||||| | || | |||||| | || || Sbjct 87321 ATGCCCTCCTTATCATGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACC 87262 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || ||||| || || || |||||||| Sbjct 87261 TCCAGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 >seq66 Length=542294 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 ||||||||||| || || ||||| |||| ||||| | || || ||||| || || Sbjct 261595 CCTCCCCTCAAGCGGAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAAC 261654 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||| | ||| || | || || |||||| | ||||| || ||||| || || || Sbjct 261655 AGAGTGTGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGG 261714 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || ||||| || ||||| | || |||||| | || | |||||| | || || Sbjct 261715 ATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACC 261774 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || || || || | ||| || ||||| |||||||| Sbjct 261775 TCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 >seq4400 Length=129001 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||||||||||| || || || || ||||| || ||||| ||||| | Sbjct 40579 CCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40520 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||||||| | || | || ||||| || || || Sbjct 40519 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 40460 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | || || || | || | || || | || || Sbjct 40459 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40400 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || || ||||| || | ||| || || || |||||||| Sbjct 40399 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 29560 CCTCCCCTCAAACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCA 29619 || ||||||| ||| ||||| | || || || || ||||| || ||||| ||||| | Sbjct 40123 CCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40064 Query 29620 ATGGTGCGAGAATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGA 29679 | ||||| ||| || || || ||||||||| | || | || ||||| || || || Sbjct 40063 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGG 40004 Query 29680 ATACCCTCTTTGTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACT 29739 || || ||||| || || | || || || | || | || || | || || Sbjct 40003 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 39944 Query 29740 TCAAGAGTTATAGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATTTT 29789 || || || || || ||||| || | ||| || || || ||||||||||| Sbjct 39943 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTT 39894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384783648540852