Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq1881 304 1e-76 seq17588 156 3e-32 seq13417 93.3 3e-13 seq7632 86.0 5e-11 >seq1881 Length=198091 Score = 304 bits (336), Expect = 1e-76 Identities = 975/1502 (65%), Gaps = 23/1502 (2%) Strand=Plus/Minus Query 281381 TTAGTAATAGTAATATTCTTGGATTTGTTTGTTGATTTATCAGCGGCAGTCACATTAAGA 281440 ||||| ||||| || || || ||| ||| |||||| | |||| ||||| || Sbjct 80449 TTAGTGATAGTGATCTTGTTCTCTTTTCCTGTACTCTTATCAACAGCAGAGACATTGAGG 80390 Query 281441 ATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGT 281500 || ||||||||||| ||||| ||||||||||| ||||| || || | | ||| || Sbjct 80389 ATGCCATTGGCATCAGTGTCAAAAGTGACTTCAATCTGAGGAACACCACGGGGGGCAAGT 80330 Query 281501 GGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCA 281560 || || ||| | | || | || || || ||||| | || | | ||| Sbjct 80329 GGTATGCCTGTGAGTTCGAACTTGCCAAGCAGGTTGTTATCCCTGGTCATGGCATGCTCA 80270 Query 281561 CCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTG 281620 || || ||| || || || ||| || || || || || || || || | Sbjct 80269 CCTTCATAAACCTGAATGAGCACACCAGGCTGGTTGTCAGAGTAGGTAGTGAAGGTTTGT 80210 Query 281621 GATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || |||||| ||||| || | | || | ||||| | |||||||| Sbjct 80209 GTCTGCTTGGTAGGAATGGTTGTATTGCGCTTGATGAGGACTGTCATGACCCCACCAGCA 80150 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 ||||| | |||||| ||||||||||||||||| | || | | || ||||| |||||| Sbjct 80149 GTTTCAATACCAAGGGAAAGAGGAGTGACATCTAACAGCAGCAAATCTTGAACATTTTCA 80090 Query 281741 TCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATCA 281800 | | ||| ||||| ||||| || | ||| |||||||| |||||||| |||||| Sbjct 80089 GATTTGTCTCCAGACAGAATGGCTGCCTGGACAGCTGCACCATAAGCAACAGCCTCATCA 80030 Query 281801 GGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTTAC- 281859 || || | | | ||| |||| ||| |||||||| || | ||||||| ||| | Sbjct 80029 GGGTTGATGCTCTTATTCAGTTCTTTTCCATTGAAGAAGTCCTGCAGAAGTT-TCTGAAT 79971 Query 281860 CTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCAG 281919 ||| || || || | || || || |||| ||||| ||||| | ||| || || || || Sbjct 79970 CTTGGGGATTCGGGTAGAACCACCTACTAGGACAATATCATGGATCTGGGACTTGTCTAG 79911 Query 281920 TTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACAAGTCTGAACA 281979 || | |||| | |||| || ||||| || || | | || | ||| | | Sbjct 79910 CTTAGCATCCTGCAGGGCTTTCTCTACGGGATCCAGGGTGCCACAGAATAGGTCAGCATT 79851 Query 281980 AAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTTCGAACAAAGA 282039 |||||||| || | || | |||| | | || ||||||||||||| | | || Sbjct 79850 GAGTTCTTCAAACCTGGCACGGGTAATGGAGGTATAGAAATCAATTCCTTCATAGAGTGA 79791 Query 282040 ATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC--GTTCACAT 282097 |||| ||||| | | || || || || |||| ||||||| | || || | Sbjct 79790 GTCAATCTCAATACTGGCCTGGGTAATGGAGGAGAGTGTGCGTTTAGAAGCAGTACAGAG 79731 Query 282098 GCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAATCTGTTTTATATTTTCTC 282157 | | || | || || | || | |||| || | |||| || | | Sbjct 79730 ACAATGGACAGCCCTC-------TTGTTCTCACTGATG----TCCTTCTTATGCTTGCGC 79682 Query 282158 TTGAAATCTTCAACACACCATGTT--ACAAGACGATTATCAAAATCTTCACCTCCCAATT 282215 ||||| || ||| | ||| | || | || || ||||||||||| || || || | Sbjct 79681 TTGAACTCGGCAATGAA--ATGGTTGACCATTCGGTTGTCAAAATCTTCTCCACCTAAGT 79624 Query 282216 TAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAGTAA 282275 || | ||| | |||| | | || | || | ||||||||||| || | | | | Sbjct 79623 GGGTGTCTCCAGCTGTAGATTTGACCTCAAAGATTCCATCTTCAATAGTGAGGATGGACA 79564 Query 282276 CATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTT 282335 ||||| || ||||| || | ||||| ||||| || ||| |||| | |||| Sbjct 79563 CATCAAAAGTGCCACCTCCTAAGTCAAAGATAAGCACGTTCCTTTCAGCTCCAACCTTTT 79504 Query 282336 TATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAA 282395 | || | ||||| ||| ||||||||||||||| ||||| || || || | ||||| | Sbjct 79503 TGTCTAAGCCATAAGCAGTAGCAGCAGCAGTTGGCTCATTGATGATCCTGAGTACATTGA 79444 Query 282396 GACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAG 282455 |||||||||| |||| |||||||| || || || || || || || ||||| |||| Sbjct 79443 GACCAGCAATAGTTCCAGCATCTTTGGTTGCCTGATGCTGAGAGTCATTGAAATAAGCAG 79384 Query 282456 GAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCA 282515 | ||||| | ||| |||| || || || || | |||||| ||| ||| |||| Sbjct 79383 GTACAGTGACAACAGCATTGGTAACAGTCTTCCCTAGATAAGCTTCTGCAATTTCCTTCA 79324 Query 282516 TTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGA-ATATTGCTTGGATTCATTTTGA 282574 |||| | |||| ||| ||||| | | |||||| | | | | ||| | ||| Sbjct 79323 TTTTTGTCAAAACCATAGATGACACCTCCTCTGGATAGAAACTTTTTGTCTCTCCCTTG- 79265 Query 282575 TATGATACTTCAAAATATGGTTTATTACCAACATTAATAACTTTAAATGGCCAATATTTC 282634 ||| |||| | | || | || |||| | || | || ||||||| ||| Sbjct 79264 TATTCCACTTGGACCTTGGGCCTGCCTGCATCATTCACCACCATGAAGGGCCAATGCTTC 79205 Query 282635 ATATCTGATTGAACACTTTGGTCATTAAAATCT-CTACCAATTAATCGTTTTGCATCAAA 282693 ||||||||||| ||| ||| | |||||| | || || | || || |||||||| Sbjct 79204 ATATCTGATTGGACAACAGCATCA-TCAAATCTACGTCCTATAAGACGCTTGGCATCAAA 79146 Query 282694 AATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCTGCATCTCCAATCAGATGTTC 282753 || || || || || || | |||| |||| | || || ||||| || |||| ||| Sbjct 79145 AACCGTGTTAGTGGGGTTCATTGCAACTTGGTTCTTTGCAGCATCACCGATCAATCATTC 79086 Query 282754 TGTCTCTGTAAATGAAACATATGATGGAGTTGTGCGATTACCTTGATCATTCGCAATAAT 282813 || || ||||| | |||||| ||| || || || || || |||||||| ||||| || Sbjct 79085 GGTATCAGTAAAGGCAACATAACTTGGGGTGGTTCGGTTTCCCTGATCATTGGCAATTAT 79026 Query 282814 TTCAACTTTACCATTTTGCCATACACCTACACAACTAAAAGTTGTTCCTAAATCAATACC 282873 ||| ||||| || | || | ||||| |||||| | || || || | |||||| || Sbjct 79025 TTCCACTTTCCCGTGCTGGAAGACACCCACACAAGAGTAGGTGGTGCCAAGATCAATGCC 78966 Query 282874 AA 282875 || Sbjct 78965 AA 78964 >seq17588 Length=70272 Score = 156 bits (172), Expect = 3e-32 Identities = 199/270 (74%), Gaps = 7/270 (3%) Strand=Plus/Plus Query 282284 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 282343 || |||||||| | ||||| | | || ||||| |||| ||| | |||| |||| | Sbjct 32585 GTACCACCACCAAGGTCAAACACAGCAACCTTCATCTCTTGATCT--GATTTT-TCAACA 32641 Query 282344 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 282403 || || |||| |||||||||||| ||||| |||||||| | || | |||||| ||| Sbjct 32642 CCGTAAGCAAGAGCAGCAGCAGTAGGTTCGTTAATAATACGTTTCACCTCAAGACCTGCA 32701 Query 282404 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTA 282463 ||| || || ||||| || ||||| | |||||| || |||||||||||||| ||| Sbjct 32702 ATTTGACCAGCCTCTTTTGTAGCTTGACGTTGTGAGTCTGAGAAATATGCAGGAACTGTA 32761 Query 282464 ATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTT 282523 || || || ||||||||||||| ||| | ||| | ||| ||||| |||||||| || Sbjct 32762 ATTACAGCCTCTGTTACTTCTTGTCCTAAATAGTCTTCTGCAGTTTGCTTCATTTT--TT 32819 Query 282524 AAA--ATCATTGATGAAATTTGTTCTGGAG 282551 || | ||||| |||| || || ||||| Sbjct 32820 GAAGTACCATTGCAGAAAGTTCTTGTGGAG 32849 Score = 123 bits (136), Expect = 2e-22 Identities = 322/491 (66%), Gaps = 15/491 (3%) Strand=Plus/Plus Query 281410 TGTTGATTTATCAGCGGCAGTCACATTAAGAATACCATTGGCATCCAAATCAAATGTGAC 281469 ||| | |||||| |||| ||| | | ||||| || ||||| | |||||| | || Sbjct 31711 TGTCGCTTTATCTTTCGCAGAAACACTCAAGATACCGTTAGCATCAATATCAAAACTTAC 31770 Query 281470 TTCAATTTGAGGGACCCCTCTCTGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAG 281529 |||||||||||| | || | ||| ||||| | || ||| | || || | || | Sbjct 31771 TTCAATTTGAGGAATACCACGCTGTGCAGGAGCAATACCTGTTAGGTTGAAATTACCAAT 31830 Query 281530 ATTATTATTATCTTTAGTGAATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGT 281589 | | ||||| | || | | | || |||||| | | | || || || || | || Sbjct 31831 AGTTTTATTTTGGTTGGCCATTGGTCTTTCACCTTGAAGCACATGAATTGTTACCTCTGT 31890 Query 281590 TTGATTATCTGAATAAGTTGTAAATACTCTGGATTTTTTACAAGGAATTGTTGTGTTTCT 281649 ||| ||||||| |||| || | | ||| ||||||||||| || ||||| Sbjct 31891 TTGGTTATCTGCCGCTGTTGAGAAAGTTTCAGCTTTCTTACAAGGAATAGTAGTGTTAGC 31950 Query 281650 ATCAATAATATTGGTCATAATACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGAC 281709 |||||||| || ||||| | |||||| ||| || | ||| | ||||||||||| || Sbjct 31951 ATCAATAAGTTTAGTCATTACACCACCTAGTGTCTCAATACCTAATGAAAGAGGAGTTAC 32010 Query 281710 ATCAACTAGGACAATATTTTGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTG 281769 ||| | ||| |||| | || || |||| |||||| | || ||| |||| Sbjct 32011 ATCTAATAGAACAACACCTTTAA---TTTCGTCAGTT---------AAAACAGCACCTTG 32058 Query 281770 AATAGCAGCACCATATGCAACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACC 281829 | ||||||||| | ||||| | ||||| || |||||| || | | |||||| Sbjct 32059 TACAGCAGCACCTAAAGCAACTACCTCATCTGGGTTAACACCTTTAGAAGGAGCTTTACC 32118 Query 281830 ATTGAAAAAATTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAA 281889 | || || | | | || || | ||| ||||||||||| ||| || |||||||| Sbjct 32119 A---AAGAAGTCTTCTACAACTTTTTGTACAGCAGGAATACGAGTTGAACCACCAACTAA 32175 Query 281890 TACAATTTCAT 281900 | | ||||| Sbjct 32176 GATTACTTCAT 32186 >seq13417 Length=55113 Score = 93.3 bits (102), Expect = 3e-13 Identities = 206/307 (67%), Gaps = 18/307 (6%) Strand=Plus/Plus Query 281265 TTTCTAATTCATTTTTAGAATCAACAGCAGCTTTTTTCTTGTTATCTGCTTCTTCAAATT 281324 |||| ||||||||| ||| ||||| | || ||| || ||| | || |||| | Sbjct 18447 TTTCCAATTCATTTCTAGTATCAATGCGTTCCTTGAGCTTTTTGTCTTCCTCGGCAAACT 18506 Query 281325 CTTTAGCTTCTCTAATCATTCTCTCAATTTGATCTTCAGAGAATCTTCCGCGATT----- 281379 | ||| || ||| ||| || ||||||| |||||| | || |||||| Sbjct 18507 TCTCAGCATCATTAACCATCCTTTCAATTT---CTTCAGG---TGTTAGGCGATTTTGGT 18560 Query 281380 -ATTAGTAATAGTAATATTCTTGGATTTGTT---TGTTGATTTATCAGCGGCAGTCACAT 281435 ||| ||||| || || || || |||||| ||| ||| || | || ||||| Sbjct 18561 CATTGGTAATGGTGATCTTATT---TTTGTTGCCTGTACCTTTGTCTTCAGCCGTCACGC 18617 Query 281436 TAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAG 281495 |||||| ||||| |||| | ||||| ||||||||||| || || ||||| | ||| Sbjct 18618 GAAGAATGCCATTCACATCTATCTCAAAGGTGACTTCAATCTGTGGAACCCCACGAGGAG 18677 Query 281496 CAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTC 281555 |||| || || || || || ||| ||||||||| | ||| ||||| || | || Sbjct 18678 CAGGAGGAATTCCCGTCAGATCAAAAGTTCCCAGAAGGTGATTGTCTTTCGTCAGGGGTC 18737 Query 281556 GTTCACC 281562 ||||||| Sbjct 18738 GTTCACC 18744 >seq7632 Length=204648 Score = 86.0 bits (94), Expect = 5e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 131181 TAGCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATT 131240 |||| || ||||| ||||| ||||| ||||||||| | || || | || ||||||| Sbjct 83677 TAGCTACCATAGCTTTTGGAATGGGCATTAATAAAGCTGACATTCGCAAAGTCATTCATT 83736 Query 131241 ACGGAGCTCCCAAGAATATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | || ||||| ||| | || ||| || || || || ||||||||||| || ||||||| Sbjct 83737 ATGGTGCTCCTAAGGAAATGGAATCATACTACCAGGAGATTGGTAGAGCTGGCCGTGATG 83796 Query 131301 GA 131302 || Sbjct 83797 GA 83798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3736075686854472