Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq65088 100 9e-16 seq6461 86.0 2e-11 >seq65088 Length=318 Score = 100 bits (110), Expect = 9e-16 Identities = 213/314 (68%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 182474 CATTAGATGGTGATGGTGCAGCAGCGATGCGTTATACTGAAGCACGTTTAGATAATCTTG 182533 || ||||||| ||| || || || |||||||| ||||| ||| | ||| ||| | | Sbjct 310 CAATAGATGGAGATTCAGCTGCTGCAATGCGTTACACTGAGGCAAGGTTAAGTAAGCAGG 251 Query 182534 GAATGTTAATGCTACAAGATGTTGACAAAAAAGTTGTTGACTTCCAACCTAACTATTCTG 182593 ||||||||||| |||| |||||| | |||||| || || |||||||||| Sbjct 250 CTATGTTAATGCTTAAAGACATTGACATGGATACTGTTGATTTTCAGAATAACTATTCT- 192 Query 182594 AAGAAACAGAA---GAACCAGTGATTTTACCAGCAGGGATTCCATACTTACTTA-TAAAT 182649 || || ||| || || || ||||||| ||| ||| | || | ||| ||||| Sbjct 191 --GATACGGAAGTTGAGCCTGTTGTTTTACCTGCA-AAATTTCCTAATCTTTTAGTAAAT 135 Query 182650 GGAGCAACTGGTATTGCAACTGGTTATACTACTGACATACCTTCCCATAATTTAAGCGAA 182709 ||| | |||||| || |||| | ||||| | || ||| | |||||| || | || Sbjct 134 GGAACCTTTGGTATAGCGGTTGGTCTTGCTACTAATATTCCTCCTCATAATCTAGGTGAG 75 Query 182710 GTAATTGATGGTATCTTAAATTTAATTCAAAATCCTGAAATTGATATTCATGGGTTAATG 182769 || ||||||| | | |||||| |||| ||| |||| |||| | | |||||| Sbjct 74 GTTATTGATGCCACTTGTGCATTAATTAAAAAACCTAAAATGGATACGGAAGATTTAATG 15 Query 182770 AAACACATTAAAGG 182783 | | |||||||| Sbjct 14 GAGTATATTAAAGG 1 >seq6461 Length=98675 Score = 86.0 bits (94), Expect = 2e-11 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 181032 GAAAAATTGCGATATGATAAAATTATTTTCATGTGTGATGCTGATGTCGATGGTTCTCAT 181091 |||||| | || || | ||||||||| ||||| ||||||||||||||||||||||| Sbjct 96839 GAAAAACTACGTTACCACAAAATTATTATCATGACCGATGCTGATGTCGATGGTTCTCAC 96780 Query 181092 ATTGAAGCACTACTACTAACGTTATTCTATAATTATATGAGACCATTAATTGAAAAAGGG 181151 ||||| ||||| | | || || |||| || |||||| || | | ||| |||| || Sbjct 96779 ATTGACACACTAATTATGACATTCTTCTTTAGATATATGCCACAAATTATTCAAAATAGG 96720 Query 181152 CA 181153 || Sbjct 96719 CA 96718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1590018189632256