Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_024382.1 Length=137090 Score E Sequences producing significant alignments: (Bits) Value seq8870 113 4e-20 >seq8870 Length=76600 Score = 113 bits (124), Expect = 4e-20 Identities = 438/680 (64%), Gaps = 79/680 (12%) Strand=Plus/Minus Query 1128 GCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAA 1187 |||||||||||||| |||||||||||| | || ||||||||||||| |||| || || Sbjct 39211 GCATTTTAAAGAAATGGCTTAGAAAAA---TTTGTAGGGCACTTACATAGTCTTGCAAAA 39155 Query 1188 GTTTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCC---GTGGTA 1244 ||||| | || || ||||| ||| | || | | ||| ||||| |||||| Sbjct 39154 GTTTTTTAGATAAGGGCTGTAATTCC---AAAACGATTTTTCGTACGTCCCTGGGTGGTA 39098 Query 1245 GTGGATGGCCG---------TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACA 1295 | |||| | | |||||||| ||||||| || |||||||||||||||| Sbjct 39097 GCCGATGCCTGAGAACCATATGGGAGGACAGCAAGGTCCCCATGCAGCAGAGCAGGAACA 39038 Query 1296 GGGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC--------------CCACACAC 1341 ||||||||| | || | || | | | ||| | |||| || |||| Sbjct 39037 GGGCAAGCCTGGCAGGTCCTGGAGAGAGAGAATGATGCTGTGAGGTACTGGGCCCGACAC 38978 Query 1342 CCCCACCTGCCCCATACCTTAACC--TGCCCAAGCT-TTCACCACCGAA-GCTGTGCCGG 1397 ||||||| ||||| | | | || | | | ||| || | || | | ||||| Sbjct 38977 CCCCACCCGCCCCG--CTTCAGCCACTTCAGACGCTGTTGAGCAACCACTGCTGT----- 38925 Query 1398 ACTGAGCCCCA-TCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCAT 1456 |||||| | || ||| | || ||| | || | ||| | |||| || | Sbjct 38924 ----AGCCCCTCTGGAGGCTTCCCCTAGATCTGGTGAGGCAAGACTGTGCCCA--AGAAG 38871 Query 1457 CAATGG-CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGC 1515 | || | | ||||| || |||||| | |||| || || | || ||| ||| Sbjct 38870 GAGCGGACAGCAGGACGCCGCGGTACCTGTGTGGGAGACCATGGTGGGGGAGCGCGT--- 38814 Query 1516 CGCCGCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTA 1575 | || | | || ||||| || ||| ||||| | | || | | || ||| | | Sbjct 38813 --CTGCCTCGACAGCAGCTTCTTGAGCCAGATGAGTTGGCAGTGGTCTTCAGGACAT--A 38758 Query 1576 TATAAAGGGCTAGTTGTAAGGAGGA---GCACTAAAAGTACCGCCCACGGTAAAGTCATT 1632 |||||||||| ||| | |||| || || | | || ||||||| || || ||||| Sbjct 38757 TATAAAGGGCCAGTCATGAGGAAGAAGAGCGATCGATGTCCCGCCCATGGCGAAATCATT 38698 Query 1633 ACTCAGA-----------AAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCA 1680 |||||| ||||| |||||||||| ||| | | | ||| | |||||| Sbjct 38697 GCTCAGATTTTCTCCAAAAAACACTTTCAAATTTCTGCTACCCAAGGCTGGGTGAAAGCA 38638 Query 1681 AGGCTCGAAGGAAATG---AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATA 1737 |||| ||||||| || | |||||||| || ||||||||||| |||| || | ||| Sbjct 38637 GGGCTGGAAGGAAGTGCTGAGGTTACCCTCAACTTGGGCAGATGCCTGACTCA--GTATA 38580 Query 1738 TACACAC-CGGGCACCCACA 1756 |||||| | ||||| |||| Sbjct 38579 GACACACACAGGCACACACA 38560 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438051423896000