Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_024382.1
Length=137090
Score E
Sequences producing significant alignments: (Bits) Value
seq8870 113 4e-20
>seq8870
Length=76600
Score = 113 bits (124), Expect = 4e-20
Identities = 438/680 (64%), Gaps = 79/680 (12%)
Strand=Plus/Minus
Query 1128 GCATTTTAAAGAAAAGGCTTAGaaaaaaaaTCTGGTGGGCACTTACATATTCTTCCATAA 1187
|||||||||||||| |||||||||||| | || ||||||||||||| |||| || ||
Sbjct 39211 GCATTTTAAAGAAATGGCTTAGAAAAA---TTTGTAGGGCACTTACATAGTCTTGCAAAA 39155
Query 1188 GTTTTGAAAATGAGAACTGTAGTTCTGTGATTACAGCTGATTGTATGTCCC---GTGGTA 1244
||||| | || || ||||| ||| | || | | ||| ||||| ||||||
Sbjct 39154 GTTTTTTAGATAAGGGCTGTAATTCC---AAAACGATTTTTCGTACGTCCCTGGGTGGTA 39098
Query 1245 GTGGATGGCCG---------TGGGAGGAGAGCAAGGCTCCGGAACAGCAGAGCAGGAACA 1295
| |||| | | |||||||| ||||||| || ||||||||||||||||
Sbjct 39097 GCCGATGCCTGAGAACCATATGGGAGGACAGCAAGGTCCCCATGCAGCAGAGCAGGAACA 39038
Query 1296 GGGCAAGCCCTGAAGATTTTGTAAAAATAGAGTAATGC--------------CCACACAC 1341
||||||||| | || | || | | | ||| | |||| || ||||
Sbjct 39037 GGGCAAGCCTGGCAGGTCCTGGAGAGAGAGAATGATGCTGTGAGGTACTGGGCCCGACAC 38978
Query 1342 CCCCACCTGCCCCATACCTTAACC--TGCCCAAGCT-TTCACCACCGAA-GCTGTGCCGG 1397
||||||| ||||| | | | || | | | ||| || | || | | |||||
Sbjct 38977 CCCCACCCGCCCCG--CTTCAGCCACTTCAGACGCTGTTGAGCAACCACTGCTGT----- 38925
Query 1398 ACTGAGCCCCA-TCCAGTCTTTCTCTTTGTCTAGGGAAACTCGACCGCACCCACCAGCAT 1456
|||||| | || ||| | || ||| | || | ||| | |||| || |
Sbjct 38924 ----AGCCCCTCTGGAGGCTTCCCCTAGATCTGGTGAGGCAAGACTGTGCCCA--AGAAG 38871
Query 1457 CAATGG-CTGTAGGACCTATCGATACCTGAGGGGGATACTATAGCAGGAGAGAGCGAGGC 1515
| || | | ||||| || |||||| | |||| || || | || ||| |||
Sbjct 38870 GAGCGGACAGCAGGACGCCGCGGTACCTGTGTGGGAGACCATGGTGGGGGAGCGCGT--- 38814
Query 1516 CGCCGCTTTGGCAACAGCTGCTAGAGTGAGATGTGCTCGCTATACTTTTAGGGAACTGTA 1575
| || | | || ||||| || ||| ||||| | | || | | || ||| | |
Sbjct 38813 --CTGCCTCGACAGCAGCTTCTTGAGCCAGATGAGTTGGCAGTGGTCTTCAGGACAT--A 38758
Query 1576 TATAAAGGGCTAGTTGTAAGGAGGA---GCACTAAAAGTACCGCCCACGGTAAAGTCATT 1632
|||||||||| ||| | |||| || || | | || ||||||| || || |||||
Sbjct 38757 TATAAAGGGCCAGTCATGAGGAAGAAGAGCGATCGATGTCCCGCCCATGGCGAAATCATT 38698
Query 1633 ACTCAGA-----------AAACA-TTTCAAATTTATGCCATCTGATCTTGGATAAAAGCA 1680
|||||| ||||| |||||||||| ||| | | | ||| | ||||||
Sbjct 38697 GCTCAGATTTTCTCCAAAAAACACTTTCAAATTTCTGCTACCCAAGGCTGGGTGAAAGCA 38638
Query 1681 AGGCTCGAAGGAAATG---AAGTTACCCTTAAGATGGGCAGATGCTTGACGCACTGCATA 1737
|||| ||||||| || | |||||||| || ||||||||||| |||| || | |||
Sbjct 38637 GGGCTGGAAGGAAGTGCTGAGGTTACCCTCAACTTGGGCAGATGCCTGACTCA--GTATA 38580
Query 1738 TACACAC-CGGGCACCCACA 1756
|||||| | ||||| ||||
Sbjct 38579 GACACACACAGGCACACACA 38560
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 438051423896000
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |