Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq4400 149 1e-30
seq66 134 3e-26
seq8809 102 2e-16
seq7041 100 6e-16
seq11706 86.0 1e-11
>seq4400
Length=129001
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || |||| |||||| || | |||||| || || |||||||| || || ||||| ||
Sbjct 40579 CCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40520
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || || || || || || ||||||||||| || || || || ||||||||
Sbjct 40519 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 40460
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
|| ||||| ||||| || ||||| || || || || || || ||||| | || || ||
Sbjct 40459 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40400
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||| || || |||||||| || | ||||| || || ||||||||
Sbjct 40399 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353
Score = 145 bits (160), Expect = 1e-29
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| ||| || || | |||||| || || |||||||| || || ||||| |
Sbjct 40125 TACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGG 40066
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || || || || || ||||||||||| || || || || || ||||
Sbjct 40065 AGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAG 40006
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| ||||| || ||||| || || || || || || ||||| | || || |
Sbjct 40005 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCA 39946
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
| |||| || || |||||||| || | ||||| || || |||||||||
Sbjct 39945 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 39896
Score = 143 bits (158), Expect = 5e-29
Identities = 169/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
|||| || |||| ||| || || | |||||| || || |||||||| || || ||||| |
Sbjct 40353 TACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGG 40294
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | | || || || || || || ||||||||||| || || || || || ||||
Sbjct 40293 AGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAG 40234
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || ||||| ||||| || ||||| || || || || || || ||||| | || || |
Sbjct 40233 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCA 40174
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || |||||||| || | ||||| || || ||||||||
Sbjct 40173 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125
>seq66
Length=542294
Score = 134 bits (148), Expect = 3e-26
Identities = 167/229 (73%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641
||||||| ||||| || || || ||||| | || || | || ||| || || || |||
Sbjct 261593 TACCTCCCCTCAAGCGGAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAA 261652
Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701
| ||| | || ||||| | || || ||||||||||| | || || || ||||| |
Sbjct 261653 ACAGAGTGTGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 261712
Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761
| || || ||||||||||| ||||| || || ||||| || || || ||| | || || |
Sbjct 261713 GGATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCA 261772
Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
| |||| || || ||||| || |||| ||||| ||||| ||||||||
Sbjct 261773 CCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821
>seq8809
Length=77097
Score = 102 bits (112), Expect = 2e-16
Identities = 130/179 (73%), Gaps = 0/179 (0%)
Strand=Plus/Minus
Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667
|| ||||| || || | ||| || || | |||||| | | | || |||| || ||
Sbjct 57495 TGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACATCCATCTTGCAGCTGC 57436
Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727
| ||| ||||||||||||||| ||||| ||| ||||| ||||||| || |||||
Sbjct 57435 TGGACAGGAAAGATTAGTCTTTGCTGATCAAGAGAAATTCCCTCCTTATGCTGGATCTTG 57376
Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786
|| ||||||||||| || ||||| ||||| | || ||||| || ||||| |||||
Sbjct 57375 GCCTTTACATTTTCTATTGTATCTAAGGGTTCAATCTCAAAAGTAATGGTCTTCCCTGT 57317
>seq7041
Length=99228
Score = 100 bits (110), Expect = 6e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Minus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|| || || |||||||| || || | || ||| || | || || || ||| | | ||
Sbjct 76597 CGAAGCACCAAGTGCAGGGTGGACTTTTCCTGAATCCTGTAGTCTGAGAGAGTGCGGCCA 76538
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| |||| |||| || ||||| || || | || | || || || || ||||||||
Sbjct 76537 TCCTCTATCCGTTTGCCTGCAAAAATCAGACACTGCTAGTCAGGTGGGATGCCTTCCTTG 76478
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
||||| || || | ||| ||||| ||| | || ||| | | | || || | |||||
Sbjct 76477 TCTTGGATTTTAGATTTGACATTCTCAGTGGTGTCACTGAGCTTAACCTCAAGGGTTATG 76418
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||||||||||| ||||| ||| | ||||||||
Sbjct 76417 GTCTTGCCTGTCAGGGTCTTCACAGAGATCTGCAT 76383
>seq11706
Length=58367
Score = 86.0 bits (94), Expect = 1e-11
Identities = 148/212 (70%), Gaps = 6/212 (3%)
Strand=Plus/Minus
Query 82604 TAAG-TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662
|||| || | || ||| || || || || || || ||||| | | | || ||||| |
Sbjct 34756 TAAGATGAAAAGCAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCA 34697
Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA----TCTGGAGGTATTCCTTCCTTATCT 82718
| | || ||||||||||| |||| | || | | ||||| ||||||||||||||
Sbjct 34696 GCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTAGGAGGAATTCCTTCCTTATCC 34637
Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778
|||||||| | ||||||| |||| | || || ||||| || || | ||| || |||
Sbjct 34636 TGAATCTTGGTTTTTACA-TTTCTGTTGTGTCCAAGGGTTCAACCTCGAGAGTGATGGTC 34578
Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|| || || | || || | || ||||||||
Sbjct 34577 TTCCCGGTAAGGGTTTTCATGAAAATCTGCAT 34546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 980660159689708
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |