Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq4400 149 1e-30 seq66 134 3e-26 seq8809 102 2e-16 seq7041 100 6e-16 seq11706 86.0 1e-11 >seq4400 Length=129001 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || |||| |||||| || | |||||| || || |||||||| || || ||||| || Sbjct 40579 CCACCCCTCAGACGCAGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAG 40520 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || || || || || || ||||||||||| || || || || |||||||| Sbjct 40519 AGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGG 40460 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 || ||||| ||||| || ||||| || || || || || || ||||| | || || || Sbjct 40459 ATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACC 40400 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| || || |||||||| || | ||||| || || |||||||| Sbjct 40399 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 Score = 145 bits (160), Expect = 1e-29 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||| | Sbjct 40125 TACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGG 40066 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||||||||| || || || || || |||| Sbjct 40065 AGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAG 40006 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || ||||| || || || || || || ||||| | || || | Sbjct 40005 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCA 39946 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 | |||| || || |||||||| || | ||||| || || ||||||||| Sbjct 39945 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 39896 Score = 143 bits (158), Expect = 5e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || |||| ||| || || | |||||| || || |||||||| || || ||||| | Sbjct 40353 TACCACCCCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGG 40294 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | | || || || || || || ||||||||||| || || || || || |||| Sbjct 40293 AGAGAGTGCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAG 40234 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| ||||| || ||||| || || || || || || ||||| | || || | Sbjct 40233 GGATGCCTTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCA 40174 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || |||||||| || | ||||| || || |||||||| Sbjct 40173 CCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 >seq66 Length=542294 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 ||||||| ||||| || || || ||||| | || || | || ||| || || || ||| Sbjct 261593 TACCTCCCCTCAAGCGGAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAA 261652 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | ||| | || ||||| | || || ||||||||||| | || || || ||||| | Sbjct 261653 ACAGAGTGTGTCCATCTTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGG 261712 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || || ||||||||||| ||||| || || ||||| || || || ||| | || || | Sbjct 261713 GGATGCCCTCCTTATCTTGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCA 261772 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| || || ||||| || |||| ||||| ||||| |||||||| Sbjct 261773 CCTCCAGGGTGATGGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 >seq8809 Length=77097 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 82608 TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTAGTTGT 82667 || ||||| || || | ||| || || | |||||| | | | || |||| || || Sbjct 57495 TGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGTACATCCATCTTGCAGCTGC 57436 Query 82668 TTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTATCTTGAATCTTT 82727 | ||| ||||||||||||||| ||||| ||| ||||| ||||||| || ||||| Sbjct 57435 TGGACAGGAAAGATTAGTCTTTGCTGATCAAGAGAAATTCCCTCCTTATGCTGGATCTTG 57376 Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGT 82786 || ||||||||||| || ||||| ||||| | || ||||| || ||||| ||||| Sbjct 57375 GCCTTTACATTTTCTATTGTATCTAAGGGTTCAATCTCAAAAGTAATGGTCTTCCCTGT 57317 >seq7041 Length=99228 Score = 100 bits (110), Expect = 6e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 || || || |||||||| || || | || ||| || | || || || ||| | | || Sbjct 76597 CGAAGCACCAAGTGCAGGGTGGACTTTTCCTGAATCCTGTAGTCTGAGAGAGTGCGGCCA 76538 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || |||| |||| || ||||| || || | || | || || || || |||||||| Sbjct 76537 TCCTCTATCCGTTTGCCTGCAAAAATCAGACACTGCTAGTCAGGTGGGATGCCTTCCTTG 76478 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 ||||| || || | ||| ||||| ||| | || ||| | | | || || | ||||| Sbjct 76477 TCTTGGATTTTAGATTTGACATTCTCAGTGGTGTCACTGAGCTTAACCTCAAGGGTTATG 76418 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||||||||||| ||||| ||| | |||||||| Sbjct 76417 GTCTTGCCTGTCAGGGTCTTCACAGAGATCTGCAT 76383 >seq11706 Length=58367 Score = 86.0 bits (94), Expect = 1e-11 Identities = 148/212 (70%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 82604 TAAG-TGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCGTCTTCTA 82662 |||| || | || ||| || || || || || || ||||| | | | || ||||| | Sbjct 34756 TAAGATGAAAAGCAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTATGTCCATCTTCCA 34697 Query 82663 GTTGTTTTCCAGCAAAGATTAGTCTTTGTTGA----TCTGGAGGTATTCCTTCCTTATCT 82718 | | || ||||||||||| |||| | || | | ||||| |||||||||||||| Sbjct 34696 GCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTAGGAGGAATTCCTTCCTTATCC 34637 Query 82719 TGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTC 82778 |||||||| | ||||||| |||| | || || ||||| || || | ||| || ||| Sbjct 34636 TGAATCTTGGTTTTTACA-TTTCTGTTGTGTCCAAGGGTTCAACCTCGAGAGTGATGGTC 34578 Query 82779 TTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || || || | || || | || |||||||| Sbjct 34577 TTCCCGGTAAGGGTTTTCATGAAAATCTGCAT 34546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980660159689708