Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_024450.1
Length=204054
Score E
Sequences producing significant alignments: (Bits) Value
seq15599 118 1e-21
seq7134 109 7e-19
seq12518 105 9e-18
seq12135 105 9e-18
>seq15599
Length=40940
Score = 118 bits (130), Expect = 1e-21
Identities = 74/80 (93%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 8650 TGCCTTATTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGG 8709
|| |||||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||
Sbjct 35979 TGACTTATTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGG 36038
Query 8710 TTCGATTCCCCGACGAGGAG 8729
||||||||||||||||||||
Sbjct 36039 TTCGATTCCCCGACGAGGAG 36058
Score = 105 bits (116), Expect = 9e-18
Identities = 68/73 (93%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 35987 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 36046
Query 11789 CCCGACGAGGAGG 11801
|||||||||||||
Sbjct 36047 CCCGACGAGGAGG 36059
Score = 98.7 bits (108), Expect = 1e-15
Identities = 65/72 (90%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||||||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 36058 CTCCTCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35999
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 35998 TACTAACGAGGA 35987
>seq7134
Length=91468
Score = 109 bits (120), Expect = 7e-19
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 11726 CCAGTCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCG 11784
||||||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||
Sbjct 77637 CCAGTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCG 77696
Query 11785 ATTCCCCGACGAGGAGG 11801
||||||||||| |||||
Sbjct 77697 ATTCCCCGACGGGGAGG 77713
Score = 104 bits (114), Expect = 3e-17
Identities = 66/72 (92%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 8658 TCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 8717
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 77641 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 77700
Query 8718 CCCGACGAGGAG 8729
||||||| ||||
Sbjct 77701 CCCGACGGGGAG 77712
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 77712 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 77653
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 77652 TACTAACGAGGA 77641
>seq12518
Length=54009
Score = 105 bits (116), Expect = 9e-18
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 35320 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 35261
Query 8717 CCCCGACGAGGAG 8729
|||||||| ||||
Sbjct 35260 CCCCGACGGGGAG 35248
Score = 100 bits (110), Expect = 4e-16
Identities = 66/72 (92%), Gaps = 1/72 (1%)
Strand=Plus/Minus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 35319 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 35260
Query 11789 CCCGACGAGGAG 11800
||||||| ||||
Sbjct 35259 CCCGACGGGGAG 35248
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 35248 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 35307
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 35308 TACTAACGAGGA 35319
>seq12135
Length=56136
Score = 105 bits (116), Expect = 9e-18
Identities = 69/76 (91%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 8657 TTCCTCGTTAGTATAGTGGTTAGTATTCCCGTCTGTCGCACGGGAGACCGGGGTTCGATT 8716
|||||||||||||||||||| ||||| |||| ||||| | ||||||||||||||||||||
Sbjct 15913 TTCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATT 15972
Query 8717 CCCCGACGAGGAGCAG 8732
|||||||| |||| ||
Sbjct 15973 CCCCGACGGGGAGGAG 15988
Score = 102 bits (112), Expect = 1e-16
Identities = 67/73 (92%), Gaps = 1/73 (1%)
Strand=Plus/Plus
Query 11730 TCCTCGTTAGTATAGTGGT-AGTATGCCCGTCTGTCGCACGGGAGACCGGGGTTCGATTC 11788
||||||||||||||||||| ||||| |||| ||||| | |||||||||||||||||||||
Sbjct 15914 TCCTCGTTAGTATAGTGGTGAGTATCCCCGCCTGTCACGCGGGAGACCGGGGTTCGATTC 15973
Query 11789 CCCGACGAGGAGG 11801
||||||| |||||
Sbjct 15974 CCCGACGGGGAGG 15986
Score = 95.1 bits (104), Expect = 2e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 139353 CTCCTCGTCGGGGATTCGAACCCCGGTCTCCCGTGCGACAAACGGGGATATTAACCACTA 139412
|||| ||||||||| |||||||||||||||||| | |||| |||||||| | |||||||
Sbjct 15985 CTCCCCGTCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTA 15926
Query 139413 TACTAACGAGGA 139424
||||||||||||
Sbjct 15925 TACTAACGAGGA 15914
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 652087728527680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |