Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_024696.1 Length=180800 Score E Sequences producing significant alignments: (Bits) Value seq12380 242 4e-59 seq8864 176 5e-39 >seq12380 Length=54645 Score = 242 bits (268), Expect = 4e-59 Identities = 619/935 (66%), Gaps = 23/935 (2%) Strand=Plus/Plus Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118 |||||| ||||| | |||| ||| || | ||| |||| || || | ||| || Sbjct 11225 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTG 11284 Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178 || ||||| || || |||| ||| || | | | ||||| || | || || | Sbjct 11285 TGTCAAACTTATTGGCAAACAAGTGGTGTG---TACGAAGAATCCAGTTCAAGTCACCTG 11341 Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238 ||| || | |||||| || |||||||| || |||||||| || || || |||| || | Sbjct 11342 CTCCAAAAATGCACACAGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCT 11401 Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298 | | || || || |||| |||||||| || ||||||| || || |||||||| | Sbjct 11402 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAG 11461 Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357 | |||| ||||| | || | || || | || || || | || | || || | | Sbjct 11462 ACATGTCATACTTAGAG-CTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATA 11520 Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417 || ||||| || | || ||||| || || || || || | ||||||||| |||| | | Sbjct 11521 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGG 11580 Query 162418 ACCGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474 | |||| |||| || | || || || ||| || || | ||| || || Sbjct 11581 A---TTTTTTCGTTCTTGAGCACATACCCTACATACTTCCTAGTGACCACAAAATAGGCA 11637 Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534 || || ||||| | || | | ||| ||| || |||||| || |||||| Sbjct 11638 CTGCCTGAAAAGAGAGGCGTTTCAAGAGGGGGGTGCATTTTGTCAGTCCCTGTGTTGGTC 11697 Query 162535 ACCATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGA 162590 | | |||| || || || ||| | ||| ||||||| | | ||| ||| | Sbjct 11698 AGCTTTCCGTCCACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGG 11753 Query 162591 CGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650 | | || || |||||| |||| ||| || | ||| |||| | || || || Sbjct 11754 CATTTTCTCAGTTTCTAGATTGTTTTCGCCCATTAATGACTTGAGCTTCCTGACAATTTC 11813 Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710 || ||||| |||| ||||| || | ||||| ||||| || | || ||||| | | Sbjct 11814 CAGGTTGGTTTTAATAGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGC 11873 Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770 || | || || || ||||| | |||||| || || |||||||| |||||||| || || Sbjct 11874 ACTCATTCTATAGAGGTCCTGCATACAGTTGAGGTCAGCCTGGACCCGACTCCATGATGC 11933 Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830 |||||| || ||||||| | | ||| |||||||| || |||||| || | || || Sbjct 11934 GTACACCACACTCTCCAGCTGACTGGTCACAAAGACGTTACTGAAACAGGATGCAATGCC 11993 Query 162831 CATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888 ||||| || |||| ||| || | ||| | || ||||| | ||| || | | Sbjct 11994 AATCACTGCAGCCAAGAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAATAGAAA 12051 Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948 |||||||| |||||||||||||| | || || ||||| || || || || || ||| Sbjct 12052 TTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAACATTTCAATTTTGTGATGAACC 12111 Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983 || |||||||| ||||| || ||||| ||||| || Sbjct 12112 ACTATAGAATATGCTATTGGAAACTCTGCCTCTTC 12146 >seq8864 Length=76667 Score = 176 bits (194), Expect = 5e-39 Identities = 222/304 (73%), Gaps = 1/304 (0%) Strand=Plus/Minus Query 171794 CCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCC 171853 || || || || || || ||||| ||||| || | ||| | |||| || || || ||| Sbjct 28302 CCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCATCC 28243 Query 171854 ACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACC 171913 | |||||| ||||| || || | || || || |||||| || | || ||||||||| Sbjct 28242 AGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCACC 28183 Query 171914 CGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTT 171973 ||||| || | |||||||| ||||| || || |||| |||||| ||| |||||||| Sbjct 28182 TTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTTT 28123 Query 171974 TCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGA 172033 || |||||| |||| | || ||||||||||| || || | ||||| | | |||| Sbjct 28122 TCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTGC 28063 Query 172034 AGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCACC 172093 |||||||||| ||| ||| | |||||||||| | | |||| ||||| || |||| | Sbjct 28062 AGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCACTTTTTCATCTTGGGTCACCA-C 28004 Query 172094 TGTC 172097 |||| Sbjct 28003 TGTC 28000 Score = 134 bits (148), Expect = 2e-26 Identities = 179/248 (72%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562 |||||||| |||| || || ||||| |||| ||||| || | ||| |||||||||| Sbjct 30911 ACAGTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCCT-- 30854 Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622 | |||| ||||| || || ||||| || || || | ||| || || ||||| |||||| Sbjct 30853 -TCCCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGATGTGGTCCCG 30795 Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682 || | ||| || ||| |||||| || || || || || || | |||||||| | Sbjct 30794 TTGGGGTGTGAGACAATTTCAGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 30735 Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742 || ||||| ||||| | ||| | ||||||||||| || |||| ||||| || || Sbjct 30734 ATCACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTAGGTGGTCTTCAAAAAAT 30675 Query 171743 TCATAGTG 171750 | |||||| Sbjct 30674 TTATAGTG 30667 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577761221331200