Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_024696.1
Length=180800
Score E
Sequences producing significant alignments: (Bits) Value
seq12380 242 4e-59
seq8864 176 5e-39
>seq12380
Length=54645
Score = 242 bits (268), Expect = 4e-59
Identities = 619/935 (66%), Gaps = 23/935 (2%)
Strand=Plus/Plus
Query 162059 CCAGGGACTTATGTCGGAGATACTCGTCTAGACACTGGACCGCGAACACGTCTCGTTCCT 162118
|||||| ||||| | |||| ||| || | ||| |||| || || | ||| ||
Sbjct 11225 CCAGGGCTTTATGCCTCAGATGCTCATCCAAACAGTGGATGGCAAAGAGGTCGATATCTG 11284
Query 162119 CATCGAACTTGTTCGCGAACAGGTGATGCGAGTTCTTCAATATCCAATTAAGATCCCCCG 162178
|| ||||| || || |||| ||| || | | | ||||| || | || || |
Sbjct 11285 TGTCAAACTTATTGGCAAACAAGTGGTGTG---TACGAAGAATCCAGTTCAAGTCACCTG 11341
Query 162179 ATCCGAACACGCACACGGACCGCACGTGCACGCCGCTGCACGGCGGATACAGGGCCCCAT 162238
||| || | |||||| || |||||||| || |||||||| || || || |||| || |
Sbjct 11342 CTCCAAAAATGCACACAGAGCGCACGTGGACTCCGCTGCAGGGGGGGTAGGGGGCGCCCT 11401
Query 162239 CGTCCACATCCCCCTCGTAGTATTGCCACTTAACGAACCTAGTGATAGCCTGCATGTCGG 162298
| | || || || |||| |||||||| || ||||||| || || |||||||| |
Sbjct 11402 TGGAAATGTCACCTTCAAAGTACTGCCACTTGACAAACCTAGCAATTGCATGCATGTCAG 11461
Query 162299 AGGTGTCGTACTTGTACACTGACGG-CACGGCTCCAGGAACACCCGGCAGTCTCTGTAGA 162357
| |||| ||||| | || | || || | || || || | || | || || | |
Sbjct 11462 ACATGTCATACTTAGAG-CTCAAGGACAGTGAGCCTGGGACTTCAGGGATCCTTTGAATA 11520
Query 162358 GTAGCCCACAGGTGTTCGTCTGGACTATACGTCTCCTTCGACCACTCCATGAACTCCCTG 162417
|| ||||| || | || ||||| || || || || || | ||||||||| |||| | |
Sbjct 11521 GTGGCCCAGAGATACTCATCTGGGCTGTATGTGTCTTTTGCCCACTCCATAAACTTCTGG 11580
Query 162418 ACCGTTTTATCGTAT---AGAATGTAAGAGACGTAGGACCTGGTCACAATAAAGTACGCG 162474
| |||| |||| || | || || || ||| || || | ||| || ||
Sbjct 11581 A---TTTTTTCGTTCTTGAGCACATACCCTACATACTTCCTAGTGACCACAAAATAGGCA 11637
Query 162475 CTACCAGAAAACACGGGTATGCGTATAGGAGGGGGCTCTTTGTCTTGACCCGTGTTGACT 162534
|| || ||||| | || | | ||| ||| || |||||| || ||||||
Sbjct 11638 CTGCCTGAAAAGAGAGGCGTTTCAAGAGGGGGGTGCATTTTGTCAGTCCCTGTGTTGGTC 11697
Query 162535 ACCATTCCCTCTACGACCACGTGTCT----CTTCCTCCACCTGGCCATCTTACTGGTAGA 162590
| | |||| || || || ||| | ||| ||||||| | | ||| ||| |
Sbjct 11698 AGCTTTCCGTCCACAAC----TGTATAATGCTTTTTCCACCTTTCTTTTTTATTGGATGG 11753
Query 162591 CGGGTGTTCGGTCTCTAGACTGTTACGACCCCCCAAGGCCTTCAGCTGACGCACCATCTC 162650
| | || || |||||| |||| ||| || | ||| |||| | || || ||
Sbjct 11754 CATTTTCTCAGTTTCTAGATTGTTTTCGCCCATTAATGACTTGAGCTTCCTGACAATTTC 11813
Query 162651 TAGATTGGTCTTAAGGGGAAAGTCGGTGCCGCAGAGATTAATAACATATTTCCACTTAAC 162710
|| ||||| |||| ||||| || | ||||| ||||| || | || ||||| | |
Sbjct 11814 CAGGTTGGTTTTAATAGGAAAATCCATACCGCAAAGATTGATCAAGTACTTCCAGTCTGC 11873
Query 162711 GCTGAGTCCGTACAGATCCTGTAGACAGTTCAGATCGGCCTGGACGCGACTCCACGACGC 162770
|| | || || || ||||| | |||||| || || |||||||| |||||||| || ||
Sbjct 11874 ACTCATTCTATAGAGGTCCTGCATACAGTTGAGGTCAGCCTGGACCCGACTCCATGATGC 11933
Query 162771 GTACACGACGCTCTCCAACCTAGTGGCGACAAAGACATTGTCGAAACACGAAACTATCCC 162830
|||||| || ||||||| | | ||| |||||||| || |||||| || | || ||
Sbjct 11934 GTACACCACACTCTCCAGCTGACTGGTCACAAAGACGTTACTGAAACAGGATGCAATGCC 11993
Query 162831 CATCACGGCCAGTGAGAAC--ATCGGGTCCGCTTTCCTATCTACGTGTACGCAGTATAGA 162888
||||| || |||| ||| || | ||| | || ||||| | ||| || | |
Sbjct 11994 AATCACTGCAGCCAAGAAGGAATCC--TCTGATTTTTTGTCCACGTGAATGCAATAGAAA 12051
Query 162889 TTCTGAGGGGCGTAGATGGCCCTCAGTAATCTCTCGAACATCTCTATCTTATGGTGTACC 162948
|||||||| |||||||||||||| | || || ||||| || || || || || |||
Sbjct 12052 TTCTGAGGCATATAGATGGCCCTCAGGAGCCTGTCAAACATTTCAATTTTGTGATGAACC 12111
Query 162949 ACGATAGAATACGCTATGGGGAACTCAGCCTCCTC 162983
|| |||||||| ||||| || ||||| ||||| ||
Sbjct 12112 ACTATAGAATATGCTATTGGAAACTCTGCCTCTTC 12146
>seq8864
Length=76667
Score = 176 bits (194), Expect = 5e-39
Identities = 222/304 (73%), Gaps = 1/304 (0%)
Strand=Plus/Minus
Query 171794 CCCGATATTTTTCCGGACCCAAAAGTATTAAACAAACACATAAAACAGCCTTCGTCCTCC 171853
|| || || || || || ||||| ||||| || | ||| | |||| || || || |||
Sbjct 28302 CCTGAGATCTTCCCAGAACCAAAGGTATTGAAGAGGCACTTGTAACACCCCTCATCATCC 28243
Query 171854 ACGGTGGTGTTCCAAAAAGTCAATGTAGAATTTCTGAGTCCGAGTTGCGTAATGTTCACC 171913
| |||||| ||||| || || | || || || |||||| || | || |||||||||
Sbjct 28242 AGGGTGGTATTCCAGAAGGTAATGGTTGAGTTATGGAGTCCCAGCTCGGTGATGTTCACC 28183
Query 171914 CGGTCCTTGTACGGAGGCTGGACGACAACACCGTGATTCTCGCTGAACGTGGCCATGTTT 171973
||||| || | |||||||| ||||| || || |||| |||||| ||| ||||||||
Sbjct 28182 TTGTCCTCATAGGCAGGCTGGAGCACAACCCCATGGTTCTTGCTGAAGGTGACCATGTTT 28123
Query 171974 TCGGGGCTCGTAGCCTTTATCTTCTGCCACGTTACTATTAAAACTTCTTTGTCGGTTTGA 172033
|| |||||| |||| | || ||||||||||| || || | ||||| | | ||||
Sbjct 28122 TCCGGGCTCACAGCCCTGATTTTCTGCCACGTCACAATCAGGACTTCGTGGGGACTTTGC 28063
Query 172034 AGAGAGCATCTTAAAGAAGCAGGTGTGTTCAATAATTCCCTTTCGTCTTGCGTTACCACC 172093
|||||||||| ||| ||| | |||||||||| | | |||| ||||| || |||| |
Sbjct 28062 AGAGAGCATCGTAAGGAAACGGGTGTGTTCAGCAGCACTTTTTCATCTTGGGTCACCA-C 28004
Query 172094 TGTC 172097
||||
Sbjct 28003 TGTC 28000
Score = 134 bits (148), Expect = 2e-26
Identities = 179/248 (72%), Gaps = 3/248 (1%)
Strand=Plus/Minus
Query 171503 ACAGTTTGTCTGATGTCTGTTACAGTCCCCAAGTGTAAGACTTTGCATATCACCTCCTCG 171562
|||||||| |||| || || ||||| |||| ||||| || | ||| ||||||||||
Sbjct 30911 ACAGTTTGCCTGAAGTAGGTCACAGTACCCAGGTGTAGCACCTGGCAGATCACCTCCT-- 30854
Query 171563 TTTCCCACTTGACTTTTAGGATCTTTTACTTGAAGAATGCTAGTAACAGATGTAGTCCCG 171622
| |||| ||||| || || ||||| || || || | ||| || || ||||| ||||||
Sbjct 30853 -TCCCCATCTGACTCTTGGGGTCTTTGACATGGAGGACGCTGGTGACGGATGTGGTCCCG 30795
Query 171623 TTACGATGTAGAACGGTTTTAGTACTATTTTCTATTCCGGATCCGGCAACTTTCCAAAAT 171682
|| | ||| || ||| |||||| || || || || || || | |||||||| |
Sbjct 30794 TTGGGGTGTGAGACAATTTCAGTACTGTTCTCAATCCCTGACCCAGAGACTTTCCAGGAG 30735
Query 171683 ATAACAGGAGCTGGTCTAGCAGTAGCAGAGCAAGTTATGTTTAATCCATCTTCGAAGAAC 171742
|| ||||| ||||| | ||| | ||||||||||| || |||| ||||| || ||
Sbjct 30734 ATCACAGGGGCTGGCCGGGCATTGGCAGAGCAAGTAATATTTAGGTGGTCTTCAAAAAAT 30675
Query 171743 TCATAGTG 171750
| ||||||
Sbjct 30674 TTATAGTG 30667
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 577761221331200
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |