Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq7134 93.3 1e-13 seq19008 91.5 3e-13 seq4400 89.7 1e-12 >seq7134 Length=91468 Score = 93.3 bits (102), Expect = 1e-13 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 |||||| | || || || || ||||| |||| ||||| |||||| |||| Sbjct 86318 AAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGTGACACCATCGAGAAC 86377 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| ||||||||||| || || || ||| || || | ||||| Sbjct 86378 GTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCAGCAGAGGTTGATCTTT 86437 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 ||||| || ||| ||||||| || | ||| || | || |||||| ||||||||||||| Sbjct 86438 GCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAACATCCAGAAAGAGTCC 86497 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 86498 ACCCTGCACCTGGT 86511 >seq19008 Length=48258 Score = 91.5 bits (100), Expect = 3e-13 Identities = 70/83 (84%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 204752 CGAAGTCTCAAAACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTC 204811 |||| |||||| |||||||||||| ||||||| || || | || ||||||| |||||| Sbjct 12709 CGAAATCTCAACACAAGGTGAAGAATAGACTCCTTTTGAATGTTGTAGTCAGACAAAGTA 12650 Query 204812 CTTCCATCTTCCAGCTGCTTTCC 204834 | |||||||||||||||||| || Sbjct 12649 CATCCATCTTCCAGCTGCTTGCC 12627 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 206308 GGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCTACT 206367 || |||||| ||||||||||| | |||||| | || |||||| | || || ||||||| | Sbjct 12627 GGCAAGCAGCTGGAAGATGGATGTACTTTGTCTGACTACAACATTCAAAAGGAGTCTATT 12686 Query 206368 CTTCACCTTGTTTTGAGACTTCG 206390 ||||||||||| |||||| |||| Sbjct 12687 CTTCACCTTGTGTTGAGATTTCG 12709 >seq4400 Length=129001 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| || || |||| Sbjct 39912 AAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGCGATACCATCGAGAAC 39971 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 39972 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTT 40031 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| | ||||||||||| ||||||||||||| Sbjct 40032 GCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAAGAGTCG 40091 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 40092 ACCCTGCACCTCGT 40105 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| || || |||| Sbjct 40140 AAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGCGATACCATCGAGAAC 40199 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 40200 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAGCAGAGGCTCATCTTT 40259 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| | ||||||||||| ||||||||||||| Sbjct 40260 GCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAAGAGTCG 40319 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 40320 ACCCTGCACCTCGT 40333 Score = 89.7 bits (98), Expect = 1e-12 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || || ||||| || || || ||||| |||| ||||| || || |||| Sbjct 40368 AAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGCGATACCATCGAGAAC 40427 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATCTTC 206304 || ||| ||||| || || |||||||| || || ||| || || || ||||| Sbjct 40428 GTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAGCAGAGGCTCATCTTT 40487 Query 206305 GCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTCT 206364 || || |||||| |||| ||||| | ||| | ||||||||||| ||||||||||||| Sbjct 40488 GCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAACATCCAGAAAGAGTCG 40547 Query 206365 ACTCTTCACCTTGT 206378 || || ||||| || Sbjct 40548 ACCCTGCACCTGGT 40561 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1180416039047012