Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq5908 100 9e-18 seq7134 98.7 3e-17 seq4431 98.7 3e-17 seq3891 95.1 4e-16 seq4499 86.0 2e-13 >seq5908 Length=105562 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | Sbjct 12010 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGAT 12069 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 12070 CCCGGGTTTCGGC 12082 >seq7134 Length=91468 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 77135 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 77194 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 77195 CCGGGTTTCGGC 77206 >seq4431 Length=128442 Score = 98.7 bits (108), Expect = 3e-17 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||||||||||||| | | Sbjct 43052 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCGATC 43111 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 43112 CCGGGTTTCGGC 43123 >seq3891 Length=157262 Score = 95.1 bits (104), Expect = 4e-16 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||||||||||||| |||||||||||||||||||| ||||||||| | | Sbjct 135423 GCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGCCCCTGGTTCGATC 135482 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 135483 CCGGGTTTCGGC 135494 >seq4499 Length=171354 Score = 86.0 bits (94), Expect = 2e-13 Identities = 59/66 (89%), Gaps = 2/66 (3%) Strand=Plus/Minus Query 2760 GTGTTTA--TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCC 2817 ||||||| | ||||| |||||||||||||| ||||||||||||||||||| ||||||| Sbjct 147865 GTGTTTAACTCACTGAAATAGCTCAGTTGGGAAAGCATTAGACTGAAGATCTGAAGGTCC 147806 Query 2818 CTGGTT 2823 |||||| Sbjct 147805 CTGGTT 147800 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15833517509940