Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq8864 280 2e-70 seq8719 165 9e-36 seq3181 154 2e-32 seq24084 116 4e-21 seq8248 116 4e-21 >seq8864 Length=76667 Score = 280 bits (310), Expect = 2e-70 Identities = 254/320 (79%), Gaps = 0/320 (0%) Strand=Plus/Plus Query 171072 GTGGTGACCCAGGATGAGAGGGTGCTGCTGAACACGCCAGCCTCCCTGAAATGCTCCCTG 171131 ||||||||||| ||||| | |||||||||||||| || | ||| | |||||| ||| Sbjct 28004 GTGGTGACCCAAGATGAAAAAGTGCTGCTGAACACACCCGTTTCCTTACGATGCTCTCTG 28063 Query 171132 CAGACTTCTCAGGAGGTGCTGATTGTCACCTGGCAGAAAATCAAGCCCACCATTCCAGAG 171191 || | | | || || || |||||||| || ||||||||||||| | | | || || Sbjct 28064 CAAAGTCCCCACGAAGTCCTGATTGTGACGTGGCAGAAAATCAGGGCTGTGAGCCCGGAA 28123 Query 171192 AACATGATAACTTTTAGCAAAGACCACGGGGTGGTGGTCCAGCCGGCTTATAAGGACAAG 171251 |||||| | || || ||||| |||| ||||| ||| ||||||| || ||| |||||||| Sbjct 28124 AACATGGTCACCTTCAGCAAGAACCATGGGGTTGTGCTCCAGCCTGCCTATGAGGACAAG 28183 Query 171252 ATAAACATCACCCAGCTTGGACTCCAAAACTCAACCATCACTTTTTGGAATACCACCTTA 171311 | ||||||||| |||| |||||||| ||||||||||| || || |||||||||||| | Sbjct 28184 GTGAACATCACCGAGCTGGGACTCCATAACTCAACCATTACCTTCTGGAATACCACCCTG 28243 Query 171312 GAGGACGAGGGGTGCTACAACTGCCTCTTTAACACCTTTGGGTCTGGGAAAATCTCGGGG 171371 || || |||||||| ||||| |||||||| || |||||||| |||||||| ||||| || Sbjct 28244 GATGATGAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGA 28303 Query 171372 GTGGCCTGCCTCACCCTCTC 171391 || |||||||||||||| || Sbjct 28304 GTAGCCTGCCTCACCCTTTC 28323 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 171388 TCTCNGTGCAGCCCACTGTGTTTCTGCATTATAAATTTTTTGATGACCACCTGAACATCA 171447 || | || |||||||| ||||| || || |||||||||||||| |||||||| || || | Sbjct 30641 TCCCAGTACAGCCCACAGTGTTCCTTCACTATAAATTTTTTGAAGACCACCTAAATATTA 30700 Query 171448 CCTGTTCTGCCAATGCCCGCCCGCCACCTCAGATTTTTTGGAAGATTTCGGGGTCAGAAA 171507 | || |||||||||||||| || | ||| ||| | ||||| | || ||||||| | Sbjct 30701 CTTGCTCTGCCAATGCCCGGCCAGCCCCTGTGATCTCCTGGAAAGTCTCTGGGTCAGGGA 30760 Query 171508 TTGAAAACAGTAGCGAGGTTCTTTCCCATTCTAATGGAACTACTTCTGTAACCAGTGTAC 171567 |||| ||||||| || || | || || | || || || || || || ||||| || | Sbjct 30761 TTGAGAACAGTACTGAAATTGTCTCACACCCCAACGGGACCACATCCGTCACCAGCGTCC 30820 Query 171568 TCCAAGTTAAAGACCCCAAGAGTCAGTTGGGAAAGGAGGTTATCTGCCAAGTGTGGCACC 171627 |||| || |||||||||||||||||| |||| |||||||| |||||||| ||| |||| Sbjct 30821 TCCATGTCAAAGACCCCAAGAGTCAGATGGGGAAGGAGGTGATCTGCCAGGTGCTACACC 30880 Query 171628 TGGGAAATGTAACTAACTTAAGGGAAACTGTAAGCAAGGGTA 171669 |||| | ||| || |||| ||| ||||||| | ||| |||| Sbjct 30881 TGGGTACTGTGACCTACTTCAGGCAAACTGTGAACAAAGGTA 30922 >seq8719 Length=77844 Score = 165 bits (182), Expect = 9e-36 Identities = 147/184 (80%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 146982 CTTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAA 147041 ||| ||||| || | ||| || | ||||||||||||||| | |||||||| |||||||| Sbjct 22562 CTTCAGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAA 22503 Query 147042 GGGGACCCCCAGGCCCATGTCCCCCGACCTCTGGTACAGCTGGCACGAGAGCTCCCCGTC 147101 ||| || ||||||||||||||||| |||||||||||||||||||| || ||||| || | Sbjct 22502 GGGCACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATT 22443 Query 147102 GGCCACGTAAAACTGGCACAGGATGTGGCACGGCGGCAGCGCCATGGCGGGCAGGTCCGC 147161 ||||||| |||||||| ||| ||||| || || || |||||| || || || | Sbjct 22442 CACCACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAGAGGAAGATCTGA 22383 Query 147162 GGGG 147165 |||| Sbjct 22382 GGGG 22379 >seq3181 Length=153930 Score = 154 bits (170), Expect = 2e-32 Identities = 133/167 (80%), Gaps = 12/167 (7%) Strand=Plus/Plus Query 178231 AGGGTTACTTGGGTTGCCAGGCCTTGTCAGAGATGATTCAGTTTTACTTGGAGGAGGTGA 178290 |||||||| |||||||||| ||||||||||||||||| ||||||||| || |||| |||| Sbjct 30136 AGGGTTACCTGGGTTGCCAAGCCTTGTCAGAGATGATCCAGTTTTACCTGAAGGAAGTGA 30195 Query 178291 TGCCTCAGGCCGAGAATCACAGCGGGGGTGGAGGCCCGGACATTAAGGAGCATGTAAACT 178350 |||| | ||| ||||| |||| |||| ||||| || |||||||| |||| Sbjct 30196 TGCCCCTGGCTGAGAACCACA------------GCCCAGACATCAACGAGCATGTGAACT 30243 Query 178351 CTCTGGGGGAAAAGCTAAAGACCCTTAGAGTGAGGCTGCGGCGATGT 178397 | |||||||||||||| ||||| || || |||||||||| || ||| Sbjct 30244 CCCTGGGGGAAAAGCTGAAGACTCTCAGGCTGAGGCTGCGACGCTGT 30290 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/87 (85%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 178462 AGCTTCAAGAAAAGGGTGTTTACAAAGCTATGAGTGAGTTTGATATTTTTATTAACTACA 178521 |||| ||||| || ||||| |||||||| |||||||||||||| || || || ||||||| Sbjct 32388 AGCTCCAAGAGAAAGGTGTCTACAAAGCCATGAGTGAGTTTGACATCTTCATCAACTACA 32447 Query 178522 TAGAAGCTTACATGACAACAAAAATGA 178548 ||||||| |||||||||| | ||||| Sbjct 32448 TAGAAGCCTACATGACAATGAGAATGA 32474 >seq24084 Length=17035 Score = 116 bits (128), Expect = 4e-21 Identities = 209/304 (69%), Gaps = 6/304 (2%) Strand=Plus/Minus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 ||| || |||||||| | |||||| | ||||||| ||||| | | |||||| Sbjct 9240 GTATTCCCTGGTGTTCGGGGCTGGGCTGCTGGGCAATGTGGTGGTGCTGGTGATCCTCAC 9181 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 ||| |||||||||||| |||| |||||||||||| |||| | || |||| || ||| Sbjct 9180 AAAATACAAGAGGCTCCGGATTGTGACCAACATCTACCTGCTTAATTTGGCGATTTCTGA 9121 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCACTCGGGGGGAACTGGTGG 8789 | |||| | | ||||| || || || |||||||||| | | | |||| || Sbjct 9120 CTTGCTCTTTCTGTTCACTCTGCCGTTCTGGATTCACT--ATGTGGCGTGGAA----TGA 9067 Query 8790 GTGGGACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACTGTA 8849 ||||| | | ||||| | |||||||||| | || |||| | ||| |||| Sbjct 9066 GTGGGTCTTTGGCCACCGCGTGTGTAAGTTCCTCTCAGGGCTTTATTATCTGGGCTTGTA 9007 Query 8850 CAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGCAGTTGTGTACGC 8909 |||||| || | || ||||||||| |||| | ||| |||| || || | || |||| Sbjct 9006 CAGCGAGATCTTCTTCATCATCCTGCTGACGATAGACCGGTACCTGGCCATCGTCCACGC 8947 Query 8910 GGTG 8913 ||| Sbjct 8946 CGTG 8943 Score = 100 bits (110), Expect = 3e-16 Identities = 157/222 (71%), Gaps = 2/222 (1%) Strand=Plus/Minus Query 9204 GCTCATTTTGATCATGGTGGTGCTTTATTTTGTCTTTTGGATCCCCTACAACGTCCTGCT 9263 ||||||||| |||| ||||| | | ||| | || |||| || |||||| | | || Sbjct 8643 GCTCATTTTTGTCATCATGGTGGTCTTTTTCATTTTCTGGACACCTTACAACCTGGTTCT 8584 Query 9264 CATTTTACACACCTACCAAGAGGCCATTTTTGGGCCAGACTGTGAAGCGCGGC-GCAGGG 9322 | || | | ||| | || | ||| | | ||||||||| | | |||| Sbjct 8583 CCTTCTCTCTGTTTTTCAAACGACCTTCCTTGAGACCGACTGTGAATGGAGCAAGCAGC- 8525 Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | ||||| | ||| ||||||||| | | |||||||| |||||||||| Sbjct 8524 TGGACCTGGCCATGCTGGTGACAGAGGTGATCGCCTACTCGCACTGCTGTGTCAACCCCG 8465 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCCAACAGAACCTTC 9424 | |||||||| ||||| || || ||||||||| | |||||| Sbjct 8464 TGATCTACGCCTTTGTCGGTGAGAAGTTCCAAAAACACCTTC 8423 >seq8248 Length=81636 Score = 116 bits (128), Expect = 4e-21 Identities = 202/291 (69%), Gaps = 12/291 (4%) Strand=Plus/Plus Query 8610 GTACTCTCTGGTGTTTTTGTTTGGGCTAATTGGCAATGCCCTGGTGATCCTAGTCCTCAT 8669 |||||||||||| || | ||| ||| ||||||| ||| || |||| |||||||| Sbjct 20511 GTACTCTCTGGTATTCATCACTGGCCTAGTTGGCAACATCCTAGTAGTCCTGGTCCTCAT 20570 Query 8670 AAAGTACAAGAGGCTCAGGATCATGACCAACATCTTCCTGTTCAACCTGGCCCTTGGTGA 8729 | |||||||| |||| | ||||||||||||| ||| || ||||||||| || ||| Sbjct 20571 GCAATACAAGAGACTCAAAAGTATGACCAACATCTACCTCTTTAACCTGGCCATTTCTGA 20630 Query 8730 CCTGCTGCTGATTTTCACCCTCCCCTTTTGGATTCACTTCCA-CTCGGGGGGAACT-GGT 8787 |||||| | | |||| || || || |||||| ||| | | || || |||| ||| Sbjct 20631 CCTGCTCTTCCTCCTCACACTGCCTTTCTGGATTAACTACAAGCTGAAGGATAACTGGGT 20690 Query 8788 GGGTGG-GACGCCGACCACCACATGTGTAAGTTTATAGTGGGCCTTTGCAACGTGGCACT 8846 ||| || | |||||||||||| | || |||| | || | | | Sbjct 20691 ATTTGGTGATG---------GCATGTGTAAGTTCCTCTCAGGGCTTTACTACATAGGCTT 20741 Query 8847 GTACAGCGAAGTCCTGTTTATCATCCTGTTGACTCTGGACAGGTATCTTGC 8897 ||||||||| || | || ||||||||| |||| || ||||| || || || Sbjct 20742 GTACAGCGAGATCTTTTTCATCATCCTGCTGACCCTCGACAGATACCTGGC 20792 Score = 82.4 bits (90), Expect = 9e-11 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Plus Query 9323 TGGACATGGCCCTCTTGGTGGCTGAGATGATCGCCTGCACCCACTGCTGCGTCAACCCCG 9382 ||||| ||||| | |||| | ||| |||| |||| | | ||||||||| ||||||||| Sbjct 21227 TGGACCTGGCCTTGCAGGTGACGGAGGTGATTGCCTACTCGCACTGCTGCATCAACCCCG 21286 Query 9383 TCATCTACGCGTTTGTGGGCGAAAAGTTCC 9412 |||||||||| || || || || ||||||| Sbjct 21287 TCATCTACGCCTTCGTCGGTGAGAAGTTCC 21316 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582811358140800