Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq6821 176 6e-38 seq3668 176 6e-38 seq9072 167 3e-35 seq14472 149 9e-30 seq16765 143 4e-28 seq6787 134 2e-25 seq12172 116 5e-20 >seq6821 Length=94590 Score = 176 bits (194), Expect = 6e-38 Identities = 177/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||||||||||||| |||| |||| || ||| ||||| Sbjct 84794 TACAAGGTGCTGAAGCAGGTGCACCCCGACACCGG-----CATC-TCGTCTAAGGCCATG 84847 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 84848 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCCCGC 84907 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 84908 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 84967 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| |||||| ||||||| ||| ||||| ||||||||||||| Sbjct 84968 CTGCTGCTGCCCGGCGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 85016 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 ||||||||||| ||||| |||||||| |||| ||| || ||| ||||| Sbjct 33810 TACAAGGTGCTGAAGCAAGTGCACCCGGACACCGG-----CATT-TCGTCTAAGGCCATG 33863 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||||||| || ||||||||||| |||| || |||| |||||| ||| Sbjct 33864 GGCATCATGAACTCATTCGTCAACGACATCTTCGAGCGTATCGCGGGCGAGGCGTCCCGC 33923 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| ||| ||| | || ||||||||||| ||||||||| Sbjct 33924 CTGGCGCATTACAACAAGCGCTCCACCATCACGTCCCGGGAGATCCAGACGGCCGTGCGC 33983 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||||| ||||||| ||| ||||| ||||||||||||| Sbjct 33984 CTGCTGCTGCCTGGCGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 34032 >seq3668 Length=142850 Score = 176 bits (194), Expect = 6e-38 Identities = 176/227 (78%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||||||||| |||||| |||| |||| || |||| ||||| Sbjct 98847 TACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 98794 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||||||||||||||| |||| ||||||| |||||| ||| Sbjct 98793 GGCATCATGAACTCGTTTGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 98734 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 98733 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 98674 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| ||||||||||| Sbjct 98673 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCAC 98627 Score = 158 bits (174), Expect = 2e-32 Identities = 174/229 (76%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 724915 ACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGT 724974 ||| ||||||||||||||| |||||| |||| |||| || |||| ||||| Sbjct 95128 ACACGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTTCAAGGCCATGG 95181 Query 724975 CGATCATGAACTCGTTTG-TCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 ||||||| ||||||| |||||||||| |||| ||||||| |||||| ||| Sbjct 95182 GCATCATGATCTCGTTTCCTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 95241 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 95242 CTGGCGCTTTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 95301 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 95302 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 95350 Score = 149 bits (164), Expect = 9e-30 Identities = 171/229 (75%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || ||||||||||||||||| |||||| |||| |||| || |||| | ||| Sbjct 109727 TATAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCTATG 109674 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || ||||||||||| |||||||| || |||| ||||||| |||||| ||| Sbjct 109673 GGCATTATGAACTCGTTCGTCAACGATATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 109614 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 109613 CTGGCTCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 109554 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| ||| ||||| ||||||||||||| Sbjct 109553 CTGCTGCTGCCCGGGGAGCTGGCCAAGCATGCCGTGTCCGAGGGCACCA 109505 Score = 116 bits (128), Expect = 5e-20 Identities = 124/164 (76%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 724979 CATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCCTGGC 725038 |||||||||||| ||||||||||| || | ||||||| ||| || |||||||| Sbjct 80984 CATGAACTCGTTCGTCAACGACATCTTCAAGCGCATCGTGGGCGATGCGTCGCGCCTGGC 81043 Query 725039 GCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCCTGAT 725098 | | ||| |||||| || ||| | | |||||| || ||| |||||||||||| | Sbjct 81044 GTATTACAATAAGCGCGCGACCATCACCTCCAGCGAGACCCGGACGGCCGTGCGCCTGCT 81103 Query 725099 CATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| ||| || ||||||| ||||||||| |||||| |||||| Sbjct 81104 GCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGAGCACCA 81147 >seq9072 Length=74950 Score = 167 bits (184), Expect = 3e-35 Identities = 176/229 (77%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||||||||| |||||| || ||| |||| || |||| ||||| Sbjct 15648 TACAAGGTGCTCAAGCAGGTCCACCCCGACAC---TGG--CATC-TCGTCCAAGGCCATG 15595 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||| ||||| |||| ||||||| |||||| ||| Sbjct 15594 GGCATCATGAACTCGTTCGTCAAAGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 15535 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 15534 CTGGCGCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 15475 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || |||||| ||||||||| ||||||||||||| Sbjct 15474 CTGCTGCTGCCCGGGGAGTTGGCCAAGCACGCCGTGTCCGAGGGCACCA 15426 Score = 167 bits (184), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 6/229 (3%) Strand=Plus/Plus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||||||||||||||| |||||| |||| |||| || |||| ||||| Sbjct 37887 TACAAGGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 37940 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 37941 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 38000 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||||| | ||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 38001 CTGGCGCATTATAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 38060 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | ||| ||| || ||||||| |||||| || ||||||||||||| Sbjct 38061 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCTGTGTCCGAGGGCACCA 38109 >seq14472 Length=45083 Score = 149 bits (164), Expect = 9e-30 Identities = 170/227 (75%), Gaps = 6/227 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 || || |||||||||||||| |||||| |||| |||| || |||| ||||| Sbjct 5424 TATAAAGTGCTCAAGCAGGTCCACCCCGACACCGG-----CATC-TCGTCCAAGGCCATG 5371 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 |||||||||||||| ||||||||||| |||| ||||||| |||||| ||| Sbjct 5370 GGCATCATGAACTCGTTCGTCAACGACATCTTCGAACGCATCGCGGGCGAGGCGTCGCGC 5311 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | |||||| ||| || ||| | | | ||||||||||| ||||||||| Sbjct 5310 CTGGCTCATTACAACAAACGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGTGCGC 5251 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCAC 725140 ||| | ||| ||| || ||||||| ||||||||| |||||||| || Sbjct 5250 CTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGTAC 5204 Score = 134 bits (148), Expect = 2e-25 Identities = 168/229 (73%), Gaps = 6/229 (3%) Strand=Plus/Minus Query 724914 TACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATG 724973 |||||||| ||||||||||| ||||| |||| |||| || ||| ||||| Sbjct 24609 TACAAGGTACTCAAGCAGGTCCACCCGGACACCGG-----CATC-TCGTCCAAAGCCATG 24556 Query 724974 TCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGC 725033 || |||||||| || ||||||||||| |||| ||||||| |||||| ||| Sbjct 24555 GGCATTATGAACTCATTCGTCAACGACATCTTCGAGCGCATCGCGGGCGAGGCGTCGCGC 24496 Query 725034 CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGC 725093 ||||| | | |||||||||| || ||| | | | ||||||||||| ||||||||| Sbjct 24495 CTGGCTCATTACAACAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACAGCCGTGCGC 24436 Query 725094 CTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||| | | | ||| |||||||||| ||| || || || |||||||||| Sbjct 24435 CTGCTGCTCCCCGGAGAACTGGCCAAGCATGCGGTGTCTGAGGGCACCA 24387 >seq16765 Length=36855 Score = 143 bits (158), Expect = 4e-28 Identities = 172/231 (74%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 724912 TCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCA 724971 |||| || ||||| |||||||| ||||| || ||| |||| || ||| ||| Sbjct 11783 TCTATAAAGTGCTGAAGCAGGTCCACCCTGACAC---TGG--CATC-TCGTCGAAGGCCA 11730 Query 724972 TGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC 725031 || |||||||||||||| |||||||||| |||| ||||| | |||||| | Sbjct 11729 TGGGCATCATGAACTCGTTCATCAACGACATCTTCGAGCGCATGGCGGGCGAGGCGTCGC 11670 Query 725032 GCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGC 725091 ||||||| | | |||||||||| || ||| | | | ||||||||||| ||||||| Sbjct 11669 GCCTGGCCCATTACAACAAGCGCTCTACCATCACCTCCAGAGAGATCCAGACGGCCGTGC 11610 Query 725092 GCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||| | ||| ||| || ||||||| ||||||||| ||||||||||||| Sbjct 11609 GCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCCGAGGGCACCA 11559 >seq6787 Length=94921 Score = 134 bits (148), Expect = 2e-25 Identities = 168/228 (74%), Gaps = 12/228 (5%) Strand=Plus/Plus Query 724915 ACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGT 724974 ||||||||||||||||||| |||| | |||| |||| || |||| ||||| Sbjct 28049 ACAAGGTGCTCAAGCAGGTCCACCTCGACACCGG-----CATC-TCGTCCAAGGCCATGG 28102 Query 724975 CGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTCGCC 725034 |||||||||||||| |||||| || |||| ||||||| |||||| |||| Sbjct 28103 ACATCATGAACTCGTTCGTCAAC---ATCTTCGAGCGCATCGCGGGCGAGGCATCGCGCC 28159 Query 725035 TGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCGCC 725094 |||||| | ||| |||| || ||| | | | ||||| ||||| |||||||||| Sbjct 28160 TGGCGCATTTCAA---GCGCTCGACCATCACCTCCAGGGAGATACAGACAGCCGTGCGCC 28216 Query 725095 TGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | ||| || |||||||||| ||||||||| ||||||||||||| Sbjct 28217 TGCTGCTGCCGGGGGAACTGGCCAAGCACGCCGTGTCCGAGGGCACCA 28264 >seq12172 Length=55910 Score = 116 bits (128), Expect = 5e-20 Identities = 168/233 (72%), Gaps = 8/233 (3%) Strand=Plus/Minus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATC-CTCCAACAAGTC 724969 |||||||||||||| || || || ||||| || ||| ||| || ||| || | Sbjct 32113 ATCTACAAGGTGCTAAAACAAGTTCACCCTGACAC---TGGA--ATCTCTTCAA--AGGC 32061 Query 724970 CATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG 725029 |||| |||||||| || || || | ||||| |||| ||||||| |||||| Sbjct 32060 CATGAGTATCATGAATTCTTTCGTAACGGACATCTTCGAGCGCATCGCGGGCGAGGCATC 32001 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| || ||| | || ||||||| || ||| | | | ||||||||||| ||||| Sbjct 32000 GCGCTTGACGCATTACAGCAAGCGCTCGACCATCACCTCCAGGGAGATCCAGACGGCCGT 31941 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 ||||||| | ||| ||| || ||||||| ||||||||| || |||||||||| Sbjct 31940 GCGCCTGCTGCTGCCCGGGGAGCTGGCCAAGCACGCCGTGTCTGAGGGCACCA 31888 Score = 107 bits (118), Expect = 3e-17 Identities = 168/230 (73%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 724915 ACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCCATGT 724974 |||| |||| | |||||| |||||| || || ||| |||| || |||| || || Sbjct 23645 ACAAAATGCTGAGGCAGGTCCACCCC-GACCC--TGG--CATC-TCGTCCAAGGCCGTGG 23698 Query 724975 CGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGTC--G 725032 ||| |||||||||| ||||||||||| |||| |||||| |||||| ||| | Sbjct 23699 GCATCGTGAACTCGTTCGTCAACGACATCTTCGAGCGCATCACAGGCGAGGC--GTCGTG 23756 Query 725033 CCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTGCG 725092 ||||||||| |||||||| | | ||| | | | |||| || ||| |||||||| Sbjct 23757 CCTGGCGCGTCGCAACAAGCTC--GGCCATCCCCTCCAGGGAGA-CCCGACGGCCGTGCG 23813 Query 725093 CCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 || | | ||| ||| || ||||||| |||| |||| ||||||||||||| Sbjct 23814 CCCGCTGCTGCCCGGGGAGCTGGCCAAGCAC-CCGTGTCCGAGGGCACCA 23862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7168863170085064