Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_027213.1
Length=214699
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 295 9e-75
seq7358 125 1e-23
seq1625 125 1e-23
seq2665 123 3e-23
>seq20608
Length=25523
Score = 295 bits (326), Expect = 9e-75
Identities = 629/934 (67%), Gaps = 9/934 (1%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTG---TGACATAACTCCCATTTT 39327
||| |||||| |||| || | |||| ||| ||| | | ||||| ||||| || |
Sbjct 8851 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTTGACACCACTCCTATCCT 8910
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
|| | || || | ||||| || || ||||| || |||||| || ||| | ||
Sbjct 8911 CCTATACTTGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCACTTCCAGGGAGATAGTCTC 8970
Query 39388 CATGAAATCAAACGGATTAGTTGCATTATAtttttttttAAATCCTAATTCTGAAATCAA 39447
||| || ||||| ||||| | | || | || |||| | | || || |
Sbjct 8971 CATAAAGTCAAAAGGATTTTCTACTCTAAAAACCTTGCTAAAATCCAGCTCCAGCATAAG 9030
Query 39448 TCTATCTGCAACAAATTCTATGTATGTTTTCATCATTTCACAATTCATTCCTATGAGTTT 39507
||| ||||| || ||||| || || ||||| | |||||||| || |||| ||
Sbjct 9031 TCTGTCTGCCACGAATTCAATATACTACTTCATTAAAGTACAATTCACCCCAGTGAGCTT 9090
Query 39508 AACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCGATGTCTACGGCCTCTGTTATTATCGA 39567
||||| | ||||| || || ||||| | ||| || || | | | || ||
Sbjct 9091 TACTGGCAAGGCCTCTGTGAGGAACTCCTGTTCTATCCTAACAGAATTGATGATGATTTC 9150
Query 39568 TGTTACTACCTCATCACTCGGTGGATGCAATAAATGTTTAAACATTAAGCAGGCGAAGTC 39627
| | ||| | || ||| |||| | ||||||||||| |||||| |||||
Sbjct 9151 TTTCACTCTCGGCTCCAAAGGTTTGTGCAGCAGGTGTTTAAACATCGGGCAGGCAAAGTC 9210
Query 39628 ACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAG 39687
||| |||| || | |||||| ||||| | ||| || ||||||||||| ||||||| ||
Sbjct 9211 ACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCACGAG 9270
Query 39688 ACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTAC 39747
|| | || |||||||| ||||| | |||||||| |||||||||||||| ||||| ||
Sbjct 9271 TCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCAC 9330
Query 39748 TGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGTATCATTATGT---ATCCACTTCTG 39804
| ||||| || || | | ||||| | | | || || | | ||||| |
Sbjct 9331 CGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCTCTTTGTCTCCAATCCAAGGCAA 9390
Query 39805 TGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGATAATG 39864
|||||||| || ||||||||||||| |||||| | || || ||||| |||||| | |
Sbjct 9391 AGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATTGAAGAGAAATTT 9450
Query 39865 TTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGAT 39924
|||| | || |||| || || || || | |||||| ||||||| ||| | ||
Sbjct 9451 CCTTTCTTTGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAAACATTTCAGAACGTAT 9510
Query 39925 GTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGA 39984
|||||| || || || || || || || ||||| ||||| ||||| || || |||
Sbjct 9511 GTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTGTAATCTGAACTTCTTG 9570
Query 39985 ACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAA 40044
| ||| | ||| |||| |||||||| ||||| |||||||| | ||||| || ||||
Sbjct 9571 GCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTGTTGCAAAGAAAGCCAG 9630
Query 40045 TACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATT-CCAGTCATTGATATCTT 40103
||||| ||||||||| | || || | || | || ||||| | || || |
Sbjct 9631 AACATGAGATATAAAATATCTCTCCTCAAG-CTCTAGGGCTTCCCAGTGCTGAATGTCCT 9689
Query 40104 TTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCC 40163
| || | | | || || ||||||| |||||| || ||||| || || ||||| | ||
Sbjct 9690 TAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTTTCTTATACATCTGCC 9748
Query 40164 ATATATCACGATATTGTATTGGAAAAATAACAAA 40197
| |||||| | |||| || |||| || |||||
Sbjct 9749 AAATATCATGGTATTCGATAAGAAAGATGACAAA 9782
>seq7358
Length=89575
Score = 125 bits (138), Expect = 1e-23
Identities = 108/134 (81%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 39641 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTG 39700
|||||||| || || | ||| || ||||| |||||||||||||| ||||| | || ||
Sbjct 30052 TCATCTCTGCTGATGAGTTCATTGGAAAAAGTGAGTCCAGGCATAAGACCTCTTTTCTTT 30111
Query 39701 AGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCA 39760
||||| ||||| |||||||||||||| || ||||| || |||||||| || ||||| ||
Sbjct 30112 AGCCAGAATATAGCAGCAAAAGATCCTGAGAAGAAAATTCCTTCTACAGCAGCAAAAGCC 30171
Query 39761 ACAAGTCTCTCTCC 39774
|| | ||| |||||
Sbjct 30172 ACCACTCTTTCTCC 30185
Score = 98.7 bits (108), Expect = 1e-15
Identities = 96/123 (78%), Gaps = 3/123 (2%)
Strand=Plus/Plus
Query 39987 AAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATA 40046
|||||||| || |||||||||||||| ||||||||||| |||||||| || || || |
Sbjct 39766 AAAATCTTACC---AAATTTTCATTCACAATTCCATCACTGGCGGCAAAGAAAGCTAAGA 39822
Query 40047 CATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTG 40106
||| |||||||||||| ||||| | | | | || ||||||| | || ||| ||||
Sbjct 39823 TATGAGAAATAAAATATTTCTCATCTGATTTAAGCTTGTTCCAGTGAGGGAGATCCTTTG 39882
Query 40107 ATA 40109
|||
Sbjct 39883 ATA 39885
>seq1625
Length=211188
Score = 125 bits (138), Expect = 1e-23
Identities = 102/124 (82%), Gaps = 0/124 (0%)
Strand=Plus/Plus
Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698
|||||||||| ||||| | ||| || ||||||||||| |||||||| || || || || |
Sbjct 134438 CCTCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCT 134497
Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758
||||||| ||||| | |||||||| |||||||||||||| ||||| || || ||||| |
Sbjct 134498 TGAGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGG 134557
Query 39759 CAAC 39762
| ||
Sbjct 134558 CTAC 134561
Score = 86.0 bits (94), Expect = 9e-12
Identities = 102/138 (74%), Gaps = 3/138 (2%)
Strand=Plus/Plus
Query 39271 TTAAAAGTCAACATCTAAAGAAAAATGATTATCTTCTTGT---GACATAACTCCCATTTT 39327
||| |||||| |||| || | |||| ||| ||| | | ||||| |||||||| |
Sbjct 132994 TTAGAAGTCAGCATCCAAGGTAAAAGAATTCTCTGTTGGGCTCGACATCACTCCCATCCT 133053
Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387
|| || || || || | ||||| || || ||||| || ||||||| ||| ||||| ||
Sbjct 133054 CTGATACTCGCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAGATATTCTC 133113
Query 39388 CATGAAATCAAACGGATT 39405
||| || |||||||||||
Sbjct 133114 CATAAAGTCAAACGGATT 133131
>seq2665
Length=168205
Score = 123 bits (136), Expect = 3e-23
Identities = 107/133 (80%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 68719 TGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGTATATGGTTCCACAGAT 68778
|||||||| || || | ||||| ||||| || ||||| |||||||| ||||| | ||
Sbjct 80470 TGAAATTCTCCTGACAGGACTCTGCGAGTATAGATATTGCTGGTATAAGGTTCAATGGAC 80529
Query 68779 TCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGGTGCCACCAATAAACTA 68838
||||||||||||||||| ||||||||||| ||||| ||||| || || | | ||||||
Sbjct 80530 TCATTATTTCCCAGAATCTGAGCAGTTGAAGCAGTAGGCATTGGGGCAATAAGTAAACTG 80589
Query 68839 TTTCTAAGACCAT 68851
||||| | |||||
Sbjct 80590 TTTCTTATACCAT 80602
Score = 114 bits (126), Expect = 2e-20
Identities = 128/171 (75%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 70331 CATCACTAAATAGtttttttGTTTCCTTGTGTAAATTTGATATGGCTATTCTGGCTGCTA 70390
|| |||| || | ||| |||||||| ||||| || || || | || || || ||||| |
Sbjct 99853 CACCACTGAACACTTTCTTTGTTTCTTTGTGCAAGTTAGAGACAGCAATCCTTGCTGCCA 99912
Query 70391 GAATAGCATAGTCAGGATGTTGTGTAGTACAAGTAGCTGCTATTTCCGCAGCTAACGTAT 70450
| || ||||||||||| || | |||||| | || || ||| |||| ||||| || ||||
Sbjct 99913 GGATGGCATAGTCAGGGTGCTTTGTAGTCAAGGTCGCAGCTGTTTCAGCAGCCAAAGTAT 99972
Query 70451 CTAATTCTATAGTTGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGG 70501
||| ||| | ||| || || || | |||| || ||||| ||||||||||
Sbjct 99973 CTAGTTCCACAGTGGTGACCCCACTGTATAAGCCCTGAATTACTTTCATGG 100023
Score = 86.0 bits (94), Expect = 9e-12
Identities = 62/72 (86%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 69507 ATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTGGACA 69566
||||||| || ||||| ||||||||||| ||||||| |||||||| |||||||||||
Sbjct 88657 ATATAGCTTCTCAAATTCCTCTCCCCAAACTTCATCCAGACCAGGACACTCATTTGGACA 88716
Query 69567 CATCAATGACCA 69578
|||||| |||||
Sbjct 88717 CATCAAAGACCA 88728
Score = 84.2 bits (92), Expect = 3e-11
Identities = 99/134 (74%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 69595 ACTCGTTTCATAAATAGATCGGGAATCCAAAGAGCTATAAAGAGATCTCTGGTTCTATTT 69654
||||||||||| || ||||| |||||||||||||| | || || || || | | | |
Sbjct 89090 ACTCGTTTCATGAAGAGATCTGGAATCCAAAGAGCAAAGAAAAGGTCCCTAGCACGCTGT 89149
Query 69655 TCTTCATTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGT 69714
||||| |||||||| || || || | ||| || ||||| | || || ||||||| ||
Sbjct 89150 TCTTCTTTTCCTGTGTTCTTCTTTAAATCAAGGAACTCAAAGATGTCTAAATGCCAAGGC 89209
Query 69715 TCTAGATATATCGC 69728
|| || || || ||
Sbjct 89210 TCCAGGTAAATAGC 89223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 686112226210080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |