Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq25394 123 6e-23 >seq25394 Length=23467 Score = 123 bits (136), Expect = 6e-23 Identities = 218/308 (71%), Gaps = 21/308 (7%) Strand=Plus/Plus Query 331986 GTTTCATCAA---TTGTCGGCTCAACTACGTCAATTTTCATAAAACGACGAGTTAATGCA 332042 |||||||| | |||| || || |||| ||||||| |||||||| ||| || Sbjct 11611 GTTTCATCTACAGTTGTAGGTTCTACTAG---AATTTTCTGGAAACGACGCTCTAAAGCT 11667 Query 332043 CTATCTTTCTCGATATTTTTACGATATTCATCATATGTTGTTGCACCAATTACA-CGAAT 332101 | |||||| || ||| | |||||||| || || ||||||||||||||| |||| | || Sbjct 11668 CCATCTTTTTCTATACTATTACGATACTCGTCTAATGTTGTTGCACCAA-TACATTGGAT 11726 Query 332102 CTCACCACGTGAAAGTGCTGGCTTAAGCATATTGCTCATGTCCATAGAACCATTACTTGC 332161 ||| || |||| || || || || | |||||| | ||||| |||||| | || Sbjct 11727 CTCTCCTCGTGCCAGAGCAGGTTTTAAAATATTGGCCGCATCCATTGAACCAGCA---GC 11783 Query 332162 GGAACCAGCCCCAACCATAATATGAATTTCATCAATGAAAACAATAGTATTTTCACG--- 332218 ||||| || ||||| | |||||||||| || ||||| | ||| || ||| | Sbjct 11784 AGAACCTGCACCAACTAGTGTATGAATTTCGTCGATGAATATAAT--TA-CATCAGGGTT 11840 Query 332219 TTTCTTTAGTTCTTT--TAGCAAATTGTCGATGCGTTCTTCAAATTCACCACGATACTTA 332276 ||| |||||||| || || | ||||| || || |||||||| | ||||| || || Sbjct 11841 TTTGTTTAGTTCGTTGATAATAGATTGT--ATTCGCTCTTCAAACTGGCCACGGTATTTT 11898 Query 332277 GTACCAGC 332284 |||||||| Sbjct 11899 GTACCAGC 11906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1112506455241056