Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_027778.1
Length=124244
Score E
Sequences producing significant alignments: (Bits) Value
seq20608 214 1e-50
seq8719 100 2e-16
seq1625 100 2e-16
seq7358 93.3 3e-14
seq1068 86.0 5e-12
>seq20608
Length=25523
Score = 214 bits (236), Expect = 1e-50
Identities = 580/867 (67%), Gaps = 27/867 (3%)
Strand=Plus/Minus
Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759
|||||| | |||| || |||| ||||| || ||||| ||||| || ||| ||||
Sbjct 9782 TTTGTCATCTTTCTTATCGAATACCATGATATTTGGCAGATGTATAAGAAAATGGAGGCT 9723
Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817
|| |||||| |||| || || || | | | |||| ||| | ||||| ||| ||
Sbjct 9722 TCCTTTTGGGCAGCTGAGGAGGTGG-TCTCTCTAAGGACATTCAGCAC--TGGGAAGCCC 9666
Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877
|| | | | || | | ||||||||||| ||| |||| || ||||| | || || |
Sbjct 9665 TAGAGCTTGAGGAGAGATATTTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATG 9606
Query 43878 GGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGC 43935
| ||||| |||||||| ||||| ||| || || ||||||||||| ||||| ||||||
Sbjct 9605 GCATAGTAAATGAAAACTTGGTGGAGTGTTTTAGC-CAAGAAGTTCAGATTAC-AGAAGC 9548
Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995
| ||||| ||||| || ||||||||||| ||||| || | ||| ||||||| |||||
Sbjct 9547 CCTCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACGTTCTGAAATGTTTAGTCT 9488
Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055
|| || || || ||||| || || | || | | | | || ||||| || ||
Sbjct 9487 CCTCATTGACACTTACATTAAGGACTCCAAAGAAAGGAAATTTCTCTTCAATGCCATTGA 9428
Query 44056 AACAGTACCTGCGATTAAA-CATAAAGCAGACTGGGC----CCTT-AAATGGATAAATTC 44109
| | ||| || |||| | || ||||| ||||| |||| | |||| | |
Sbjct 9427 GATGATGCCT-CGTGTAAAGAAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACA--A 9371
Query 44110 AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169
| | | | | | ||||||||| | || || ||||| |||||||| || ||||||||
Sbjct 9370 AGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTC 9311
Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229
|| || ||||| | ||||| ||| | ||||| | ||| | ||||||| | || ||
Sbjct 9310 TGGTTCTTTTGCATCAATATTCTGGCTCAAGAATCAAGGACTCGTGCCTGGTCTCACATT 9251
Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACT 44289
||| ||||| | || || | ||| |||| ||||| || || ||||| ||| | | |
Sbjct 9250 TTCCAATGAACTTATTAGCAGAGATAAAGGTTTACACTGTGACTTTGCCTGCCCGATGTT 9191
Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAG 44347
| | | || | | | || |||| || | || | | | ||| || | | |
Sbjct 9190 TAAACACCT-GCTG--CACAAACCTT--TGGAGCCGAGAGTGAAAGAAATCATCATCAAT 9136
Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407
| || | ||||||||| || || | ||| || || || ||||| | | || ||
Sbjct 9135 TCTGTTAGGATAGAACAGGAGTTCCTCACAGAGGCCTTGCCAGTAAAGCTCACTGGGGTG 9076
Query 44408 AA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466
|| || || ||| ||||| | |||||||||| | | ||||| | | | |||| ||
Sbjct 9075 AATTGTAC-TTTAATGAAGTAGTATATTGAATTCGTGGCAGACAGACTTATGCTGGAGCT 9017
Query 44467 GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTT 44526
|| || || | || ||| |||| || ||||| |||||||| | ||| || |
Sbjct 9016 GGATTTTAGCAAGGTTTTTAGAGTAGAAAATCCTTTTGACTTTATGGAGACTATCTCCCT 8957
Query 44527 GGAAGGCAAAACAAACTTTTTTGAAAA 44553
||||| || || ||||| ||||| ||
Sbjct 8956 GGAAGTGAAGACTAACTTCTTTGAGAA 8930
>seq8719
Length=77844
Score = 100 bits (110), Expect = 2e-16
Identities = 96/123 (78%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135
|| ||||| ||||| |||||||| ||||| || || |||| || || ||||| |||
Sbjct 22425 TGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGAC 22484
Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195
||||| || || || || || ||||| || || ||||| |||||||| || |||||||||
Sbjct 22485 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 22544
Query 41196 CAC 41198
|||
Sbjct 22545 CAC 22547
>seq1625
Length=211188
Score = 100 bits (110), Expect = 2e-16
Identities = 94/117 (80%), Gaps = 2/117 (2%)
Strand=Plus/Minus
Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962
|||||| |||||||| || ||||| |||||| || ||||| ||||| || ||||||||
Sbjct 136539 CGGTTTAGCCAAGAAGTGCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 136481
Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019
||| ||||| || ||||| |||||||| ||||| || || || || ||||| || ||
Sbjct 136480 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAGGA 136424
Score = 89.7 bits (98), Expect = 4e-13
Identities = 100/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182
|||||||| | || || ||||| | |||||||| || |||||||| || || |||||
Sbjct 134573 GGAGAACGTGTGGTAGCCTTTGCCGCGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 134514
Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242
| ||||| ||| | ||||||||||| | |||||||| | || ||||| ||||| |
Sbjct 134513 TCGATATTCTGGCTCAAGAAACGAGGACTCATGCCTGGTCTCACATTTTCCAATGAACTT 134454
Query 44243 ATAAGTCGTGATGA 44256
|| || | |||||
Sbjct 134453 ATTAGCAGAGATGA 134440
>seq7358
Length=89575
Score = 93.3 bits (102), Expect = 3e-14
Identities = 105/140 (75%), Gaps = 3/140 (2%)
Strand=Plus/Minus
Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552
|||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| |
Sbjct 22506 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 22447
Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609
|||| ||| ||| |||||||| | | |||||| ||||| || ||| || |
Sbjct 22446 AACGGGTTTCAGAGTATCAGCGTTTTGCAGTCATGGCAGAAACAACGGATAATGTCTTCA 22387
Query 44610 CTACGGATGAAGATTTCTAA 44629
| ||||| |||||| |||
Sbjct 22386 CCTTGGATGCAGATTTTTAA 22367
>seq1068
Length=252764
Score = 86.0 bits (94), Expect = 5e-12
Identities = 116/162 (72%), Gaps = 6/162 (4%)
Strand=Plus/Plus
Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599
|| ||| ||||||||| || || | |||||| | || || ||||| ||||| |||||
Sbjct 23339 AATAGTGGTTTGCACATCATCATTTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 23398
Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653
||||| | ||||| ||||||||||| ||||| ||| | || || ||| |
Sbjct 23399 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAATTGCTCTCCAAAATT 23458
Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695
|| || || | |||||||| || || ||||| ||||| |||
Sbjct 23459 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 23500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397006612895860
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |