Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq20608 214 1e-50 seq8719 100 2e-16 seq1625 100 2e-16 seq7358 93.3 3e-14 seq1068 86.0 5e-12 >seq20608 Length=25523 Score = 214 bits (236), Expect = 1e-50 Identities = 580/867 (67%), Gaps = 27/867 (3%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 |||||| | |||| || |||| ||||| || ||||| ||||| || ||| |||| Sbjct 9782 TTTGTCATCTTTCTTATCGAATACCATGATATTTGGCAGATGTATAAGAAAATGGAGGCT 9723 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTT--AGCACATTGGATTGCAT 43817 || |||||| |||| || || || | | | |||| ||| | ||||| ||| || Sbjct 9722 TCCTTTTGGGCAGCTGAGGAGGTGG-TCTCTCTAAGGACATTCAGCAC--TGGGAAGCCC 9666 Query 43818 TAAAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACG 43877 || | | | || | | ||||||||||| ||| |||| || ||||| | || || | Sbjct 9665 TAGAGCTTGAGGAGAGATATTTTATATCTCATGTTCTGGCTTTCTTTGCAACAAGTGATG 9606 Query 43878 GGATAGTCAATGAAAATTTGGTT-AGTCGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGC 43935 | ||||| |||||||| ||||| ||| || || ||||||||||| ||||| |||||| Sbjct 9605 GCATAGTAAATGAAAACTTGGTGGAGTGTTTTAGC-CAAGAAGTTCAGATTAC-AGAAGC 9548 Query 43936 ACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCT 43995 | ||||| ||||| || ||||||||||| ||||| || | ||| ||||||| ||||| Sbjct 9547 CCTCTGTTTCTATGGCTTCCAAATTGCCATGGAAAACATACGTTCTGAAATGTTTAGTCT 9488 Query 43996 TCTGATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGATAGA 44055 || || || || ||||| || || | || | | | | || ||||| || || Sbjct 9487 CCTCATTGACACTTACATTAAGGACTCCAAAGAAAGGAAATTTCTCTTCAATGCCATTGA 9428 Query 44056 AACAGTACCTGCGATTAAA-CATAAAGCAGACTGGGC----CCTT-AAATGGATAAATTC 44109 | | ||| || |||| | || ||||| ||||| |||| | |||| | | Sbjct 9427 GATGATGCCT-CGTGTAAAGAAGAAGGCAGATTGGGCTTTGCCTTGGATTGGAGACA--A 9371 Query 44110 AAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTC 44169 | | | | | | ||||||||| | || || ||||| |||||||| || |||||||| Sbjct 9370 AGAGGCTACCTGTGGAGAACGTGTGGTAGCCTTTGCTACGGTGGAAGGAATCTTCTTTTC 9311 Query 44170 AGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTT 44229 || || ||||| | ||||| ||| | ||||| | ||| | ||||||| | || || Sbjct 9310 TGGTTCTTTTGCATCAATATTCTGGCTCAAGAATCAAGGACTCGTGCCTGGTCTCACATT 9251 Query 44230 TTCAAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACT 44289 ||| ||||| | || || | ||| |||| ||||| || || ||||| ||| | | | Sbjct 9250 TTCCAATGAACTTATTAGCAGAGATAAAGGTTTACACTGTGACTTTGCCTGCCCGATGTT 9191 Query 44290 TGGATATCTAGGAGACGATAAGCCTTCATGTA--AGACAATTACAGATATTGTTGTAGAG 44347 | | | || | | | || |||| || | || | | | ||| || | | | Sbjct 9190 TAAACACCT-GCTG--CACAAACCTT--TGGAGCCGAGAGTGAAAGAAATCATCATCAAT 9136 Query 44348 GCAGTAAAGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATG 44407 | || | ||||||||| || || | ||| || || || ||||| | | || || Sbjct 9135 TCTGTTAGGATAGAACAGGAGTTCCTCACAGAGGCCTTGCCAGTAAAGCTCACTGGGGTG 9076 Query 44408 AA-TGAACTTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACT 44466 || || || ||| ||||| | |||||||||| | | ||||| | | | |||| || Sbjct 9075 AATTGTAC-TTTAATGAAGTAGTATATTGAATTCGTGGCAGACAGACTTATGCTGGAGCT 9017 Query 44467 GGGTTGCGATAAACACTATATTGTACAAAACCCGTTTGATTTTATGGAAAATATTTCGTT 44526 || || || | || ||| |||| || ||||| |||||||| | ||| || | Sbjct 9016 GGATTTTAGCAAGGTTTTTAGAGTAGAAAATCCTTTTGACTTTATGGAGACTATCTCCCT 8957 Query 44527 GGAAGGCAAAACAAACTTTTTTGAAAA 44553 ||||| || || ||||| ||||| || Sbjct 8956 GGAAGTGAAGACTAACTTCTTTGAGAA 8930 >seq8719 Length=77844 Score = 100 bits (110), Expect = 2e-16 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 41076 TGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGAC 41135 || ||||| ||||| |||||||| ||||| || || |||| || || ||||| ||| Sbjct 22425 TGCCAGTTCTACGTGGTGAATGGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGAC 22484 Query 41136 ATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCA 41195 ||||| || || || || || ||||| || || ||||| |||||||| || ||||||||| Sbjct 22485 ATGGGCCTGGGTGTGCCCTTCAACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCA 22544 Query 41196 CAC 41198 ||| Sbjct 22545 CAC 22547 >seq1625 Length=211188 Score = 100 bits (110), Expect = 2e-16 Identities = 94/117 (80%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 43904 CGGTTTGCGCAAGAAGTTCA-ATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGC 43962 |||||| |||||||| || ||||| |||||| || ||||| ||||| || |||||||| Sbjct 136539 CGGTTTAGCCAAGAAGTGCAGATTAC-AGAAGCCCGCTGTTTCTATGGCTTCCAAATTGC 136481 Query 43963 CATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 ||| ||||| || ||||| |||||||| ||||| || || || || ||||| || || Sbjct 136480 CATGGAAAACATACATTCTGAAATGTATAGTCTCCTCATTGACACTTACATTAAGGA 136424 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 44123 GGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCG 44182 |||||||| | || || ||||| | |||||||| || |||||||| || || ||||| Sbjct 134573 GGAGAACGTGTGGTAGCCTTTGCCGCGGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCA 134514 Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 | ||||| ||| | ||||||||||| | |||||||| | || ||||| ||||| | Sbjct 134513 TCGATATTCTGGCTCAAGAAACGAGGACTCATGCCTGGTCTCACATTTTCCAATGAACTT 134454 Query 44243 ATAAGTCGTGATGA 44256 || || | ||||| Sbjct 134453 ATTAGCAGAGATGA 134440 >seq7358 Length=89575 Score = 93.3 bits (102), Expect = 3e-14 Identities = 105/140 (75%), Gaps = 3/140 (2%) Strand=Plus/Minus Query 44493 AAAACCCGTTTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAA 44552 |||| || ||||||||||||||||| ||||| || ||||| |||||||| || ||||| | Sbjct 22506 AAAATCCTTTTGATTTTATGGAAAACATTTCTTTAGAAGGGAAAACAAATTTCTTTGAGA 22447 Query 44553 AACGCGTTGGAGAATATCAGCGAATGGGCGTCATG---ATAACAAGTGACAATAAATTTA 44609 |||| ||| ||| |||||||| | | |||||| ||||| || ||| || | Sbjct 22446 AACGGGTTTCAGAGTATCAGCGTTTTGCAGTCATGGCAGAAACAACGGATAATGTCTTCA 22387 Query 44610 CTACGGATGAAGATTTCTAA 44629 | ||||| |||||| ||| Sbjct 22386 CCTTGGATGCAGATTTTTAA 22367 >seq1068 Length=252764 Score = 86.0 bits (94), Expect = 5e-12 Identities = 116/162 (72%), Gaps = 6/162 (4%) Strand=Plus/Plus Query 19540 AAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGGT 19599 || ||| ||||||||| || || | |||||| | || || ||||| ||||| ||||| Sbjct 23339 AATAGTGGTTTGCACATCATCATTTTTGATGAAATTGATGCCATCTGCAAGCAGAGAGGG 23398 Query 19600 T------CTGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTA 19653 ||||| | ||||| ||||||||||| ||||| ||| | || || ||| | Sbjct 23399 AGCATGGCTGGTAGCACAGGAGTTCATGACACTGTCGTCAACCAATTGCTCTCCAAAATT 23458 Query 19654 GACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATG 19695 || || || | |||||||| || || ||||| ||||| ||| Sbjct 23459 GATGGGGTAGAGCAACTGAACAACATCTTAGTCATTGGTATG 23500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397006612895860