Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq34498 102 9e-17 seq4146 100 3e-16 seq351 100 3e-16 >seq34498 Length=9444 Score = 102 bits (112), Expect = 9e-17 Identities = 160/225 (71%), Gaps = 8/225 (4%) Strand=Plus/Plus Query 124671 GTAATCTTGCGCGTCACAAA---CTCGGAACCGCGTCGCTCAGACTCGTGGTTGAACAGA 124727 || || || ||||| ||||| |||| || | || ||| |||||||| |||||| Sbjct 8215 GTTATTTTACGCGTTACAAAAGTCTCG---CCCCTCCGTTCACTTTCGTGGTTAAACAGA 8271 Query 124728 ATGCCAGTACAC-GCAAACATCCCGTACGACTCGCGGTAGTTTTTCGTCATCCAATACCC 124786 || ||| | ||| |||||||||||||| ||| ||||||||||| || |||||| | || Sbjct 8272 ATACCATT-CACAGCAAACATCCCGTAACTCTCTCGGTAGTTTTTAGTAATCCAAAAACC 8330 Query 124787 AAAGAGCTTGGACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGTTTTCATTTTGGGT 124846 | | |||| | ||| ||||||| ||||| || || ||||| ||||| | || | Sbjct 8331 ATACTGCTTCGCCACAGCATAGGGAGAACGGGGATAAAAAGGGGTAGTTTCACTCTGTGG 8390 Query 124847 AGGTTGCTGAATCTTCCCAAACATCTCCGAAGTACCCGCCTGATA 124891 | ||| | ||| ||| ||| |||||| ||| ||||| || Sbjct 8391 CACCTCCTGCACCTTACCATACAGCTCCGATGTAGAGGCCTGGTA 8435 >seq4146 Length=133219 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 ||||| || || || | |||||| ||||| |||||||| ||||| ||||||||||| Sbjct 17955 GTGAAAATATAGCGAGGGCTGGCAGCATCTTTGCCACCATGAAGCCGAGTTCCAAACTGA 17896 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| |||| || | ||| | |||||| |||||||| |||||||||||||||||| Sbjct 17895 CCAATAGGCTGAAGCAAGTTAATGTTGTTACTTCCCACGAAGTTCTGAGCCAAATTCACA 17836 Query 152149 ATCGT 152153 || || Sbjct 17835 ATAGT 17831 >seq351 Length=365305 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | || || | |||||||||||| ||||| || |||||||| Sbjct 266785 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 266726 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACA 152148 ||| ||||| | |||||| || || ||| ||||| ||||||||||||||||| | | Sbjct 266725 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 266666 Query 152149 ATCGT 152153 || || Sbjct 266665 ATGGT 266661 Score = 100 bits (110), Expect = 3e-16 Identities = 97/125 (78%), Gaps = 0/125 (0%) Strand=Plus/Minus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| || |||| ||||||||||||| || | ||||| || || Sbjct 266785 GTGAAGATGTATCGAGGACTAGCAGAATCCTTGCCACCATGCAGCCTGGTACCAAACTGA 266726 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 ||| | |||| |||||||||||| || ||| |||||||| || |||||||| |||| | Sbjct 266725 CCAATGGGCTGCAAGAGGTTCAGATTATTGCTACCCACAAAATTCTGAGCCAAATTGATA 266666 Query 117425 ATCGT 117429 || || Sbjct 266665 ATGGT 266661 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546581420965600