Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_028112.1
Length=178262
Score E
Sequences producing significant alignments: (Bits) Value
seq4400 143 3e-29
seq7134 136 5e-27
seq66 113 5e-20
seq8809 93.3 5e-14
seq606 89.7 6e-13
seq351 86.0 7e-12
>seq4400
Length=129001
Score = 143 bits (158), Expect = 3e-29
Identities = 168/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | |
Sbjct 40353 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40412
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||||| || || ||||| || || || || ||||||||||||
Sbjct 40413 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 40472
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || ||||||| || || || | || || ||
Sbjct 40473 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40532
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || || || ||||||| | |||||
Sbjct 40533 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGGGGTGG 40579
Score = 136 bits (150), Expect = 5e-27
Identities = 167/228 (73%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | |
Sbjct 39896 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 39955
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
|||| ||| | || ||||||| || || ||||| || || || || ||||| |||||
Sbjct 39956 CGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 40015
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | || || |||||||| ||||| || ||||||| || || || | || || ||
Sbjct 40016 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAA 40075
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || || || | ||||| | |||||
Sbjct 40076 CATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40123
Score = 134 bits (148), Expect = 2e-26
Identities = 166/227 (73%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | |
Sbjct 40125 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40184
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|||| ||| | || ||||||| || || ||||| || || || || ||||| ||||||
Sbjct 40185 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 40244
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || |||||||| ||||| || ||||||| || || || | || || ||
Sbjct 40245 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40304
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632
|||| || || || || || || || || | ||||| | |||||
Sbjct 40305 ATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40351
>seq7134
Length=91468
Score = 136 bits (150), Expect = 5e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 86531 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86590
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || ||||||||||| || || |||||||||
Sbjct 86591 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86650
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || ||||| || || || | || || || | ||||| ||
Sbjct 86651 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86710
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||||||
Sbjct 86711 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 86748
Score = 136 bits (150), Expect = 5e-27
Identities = 161/218 (74%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 86759 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86818
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || ||||||||||| || || |||||||||
Sbjct 86819 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86878
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || ||||| || || || | || || || | ||||| ||
Sbjct 86879 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86938
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| ||||| ||||| || || || ||| |||||||
Sbjct 86939 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 86976
Score = 127 bits (140), Expect = 2e-24
Identities = 159/218 (73%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 86987 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87046
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || ||||||||||| || || |||||||||
Sbjct 87047 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 87106
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | | || ||||| || || || || || || | || || || | ||||| ||
Sbjct 87107 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 87166
Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| || || || ||| |||||||
Sbjct 87167 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 87204
Score = 122 bits (134), Expect = 1e-22
Identities = 145/197 (74%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | ||
Sbjct 87215 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87274
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || || |||||||| || || |||||||||
Sbjct 87275 GACACCATCGAGAATGTCAAGGCCAAGATCCATGATAAGGAGGGCATCCCCCCAGACCAG 87334
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585
||| | || || ||||| || ||||| || || |||| || || || | ||||| ||
Sbjct 87335 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 87394
Query 27586 GTCCAAAAGGAATCCAC 27602
|||| || || |||||
Sbjct 87395 ATCCAGAAAGAGTCCAC 87411
Score = 111 bits (122), Expect = 2e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464
|||||| ||||| || || ||| | ||||| ||||| || || || ||||| ||| | |
Sbjct 86302 AATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 86361
Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524
||| | ||| | || | |||| || || || || || ||||| || || ||||||||
Sbjct 86362 TGACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 86421
Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584
|||| | | || ||||| || || || || || || | || || || | ||||| ||
Sbjct 86422 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAA 86481
Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623
|||| || || ||||| || || || ||| |||||||
Sbjct 86482 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 86520
>seq66
Length=542294
Score = 113 bits (124), Expect = 5e-20
Identities = 119/157 (76%), Gaps = 0/157 (0%)
Strand=Plus/Minus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || ||||| ||||| || || || ||||| ||| | ||
Sbjct 261821 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 261762
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525
|| | ||| | ||| | ||||| || || || || |||||||| || || |||||||||
Sbjct 261761 GACACCATCGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAG 261702
Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562
||| | | || |||||||| ||||| | || ||||
Sbjct 261701 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAAGATG 261665
>seq8809
Length=77097
Score = 93.3 bits (102), Expect = 5e-14
Identities = 138/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 27429 TACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGC 27488
||| || ||||| |||||| ||||| |||| | |||| || | |||| | |||||
Sbjct 57316 TACAGGGAAGACCATTACTTTTGAGATTGAACCCTTAGATACAATAGAAAATGTAAAGGC 57375
Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548
|| || ||| | |||||||||||| ||| || ||||| | ||||| ||| ||| |
Sbjct 57376 CAAGATCCAGCATAAGGAGGGAATTTCTCTTGATCAGCAAAGACTAATCTTTCCTGTCCA 57435
Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608
||| || | |||| |||| | | |||| || | || |||| |||||||||||
Sbjct 57436 GCAGCTGCAAGATGGATGTACTTCATCTGACTGCAACATTCAGTAGGAGTCCACTCTTCA 57495
Query 27609 TCTAGTCTTGCGTCTT 27624
||| || ||| | |||
Sbjct 57496 TCTTGTGTTGAGACTT 57511
>seq606
Length=304351
Score = 89.7 bits (98), Expect = 6e-13
Identities = 82/104 (79%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465
||||| |||||||| ||||| || || |||||||| || || |||||||||||| | ||
Sbjct 110812 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 110871
Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509
|| | || || ||| | || ||||||| || |||||||||||
Sbjct 110872 GACACCACTGAGAATGTCAAATCTAAAATCCAAGACAAGGAGGG 110915
>seq351
Length=365305
Score = 86.0 bits (94), Expect = 7e-12
Identities = 94/125 (75%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184
|||||| |||| | |||||||| ||||| ||| ||||| |||||| | | ||||
Sbjct 266661 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 266720
Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244
||| |||||||| ||| |||| |||||||||||| |||| || | || ||||||
Sbjct 266721 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 266780
Query 32245 TTCAC 32249
|||||
Sbjct 266781 TTCAC 266785
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 569649039544640
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