Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq4400 143 3e-29 seq7134 136 5e-27 seq66 113 5e-20 seq8809 93.3 5e-14 seq606 89.7 6e-13 seq351 86.0 7e-12 >seq4400 Length=129001 Score = 143 bits (158), Expect = 3e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 40353 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40412 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||| || || || || |||||||||||| Sbjct 40413 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCAGACCAG 40472 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || ||||||| || || || | || || || Sbjct 40473 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40532 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || || ||||||| | ||||| Sbjct 40533 ATCCAGAAAGAGTCGACCCTGCACCTGGTGCTGCGTCTGAGGGGTGG 40579 Score = 136 bits (150), Expect = 5e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 39896 AATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAG 39955 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 |||| ||| | || ||||||| || || ||||| || || || || ||||| ||||| Sbjct 39956 CGATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCA 40015 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | || || |||||||| ||||| || ||||||| || || || | || || || Sbjct 40016 GCAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAA 40075 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || || | ||||| | ||||| Sbjct 40076 CATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40123 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| || ||||||||||| || || || ||||| ||| | | Sbjct 40125 ATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTGGAGCCCAGC 40184 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||| | || ||||||| || || ||||| || || || || ||||| |||||| Sbjct 40185 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGATAAAGAAGGCATCCCTCCCGACCAG 40244 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || |||||||| ||||| || ||||||| || || || | || || || Sbjct 40245 CAGAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGCCGCACTCTCTCCGATTACAAC 40304 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || || || || || || || | ||||| | ||||| Sbjct 40305 ATCCAGAAAGAGTCGACCCTGCACCTCGTGCTCCGTCTGAGGGGTGG 40351 >seq7134 Length=91468 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 86531 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86590 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || || ||||||||| Sbjct 86591 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86650 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || || | || || || | ||||| || Sbjct 86651 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86710 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 86711 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 86748 Score = 136 bits (150), Expect = 5e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 86759 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 86818 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || || ||||||||| Sbjct 86819 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 86878 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || ||||| || || || | || || || | ||||| || Sbjct 86879 CAGAGGTTGATCTTTGCCGGGAAGCAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 86938 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| ||||| ||||| || || || ||| ||||||| Sbjct 86939 ATCCAGAAGGAGTCCACCCTGCACCTGGTCCTGCGTCT 86976 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 86987 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87046 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || ||||||||||| || || ||||||||| Sbjct 87047 GACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAGGGCATCCCCCCAGACCAG 87106 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || ||||| || || || || || || | || || || | ||||| || Sbjct 87107 CAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAAC 87166 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 87167 ATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 87204 Score = 122 bits (134), Expect = 1e-22 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | ||||| ||||| || || || ||||| ||| | || Sbjct 87215 ATGCAGATCTTCGTGAAGACCTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 87274 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || || |||||||| || || ||||||||| Sbjct 87275 GACACCATCGAGAATGTCAAGGCCAAGATCCATGATAAGGAGGGCATCCCCCCAGACCAG 87334 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | || || ||||| || ||||| || || |||| || || || | ||||| || Sbjct 87335 CAGAGGCTGATCTTTGCCGGGAAGCAGCTGGAAGATGGACGCACTCTGTCTGACTACAAC 87394 Query 27586 GTCCAAAAGGAATCCAC 27602 |||| || || ||||| Sbjct 87395 ATCCAGAAAGAGTCCAC 87411 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||| || || ||| | ||||| ||||| || || || ||||| ||| | | Sbjct 86302 AATGCAGATCTTCGTAAAAACGTTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAG 86361 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | ||| | || | |||| || || || || || ||||| || || |||||||| Sbjct 86362 TGACACCATCGAGAACGTCAAGGGGAAGATCCAAGAAAAAGAGGGCATCCCCCCAGACCA 86421 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 |||| | | || ||||| || || || || || || | || || || | ||||| || Sbjct 86422 GCAGAGGTTGATCTTTGCCGGGAAACAGCTGGAAGACGGCCGCACTCTGTCTGACTACAA 86481 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 |||| || || ||||| || || || ||| ||||||| Sbjct 86482 CATCCAGAAAGAGTCCACCCTGCACCTGGTCCTGCGTCT 86520 >seq66 Length=542294 Score = 113 bits (124), Expect = 5e-20 Identities = 119/157 (76%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || ||||| ||||| || || || ||||| ||| | || Sbjct 261821 ATGCAGATCTTTGTGAAGACCCTGACCGGTAAGACCATCACCCTGGAGGTGGAGCCCAGT 261762 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| || || || || |||||||| || || ||||||||| Sbjct 261761 GACACCATCGACAATGTCAAGGCCAAGATCCAAGATAAGGAGGGCATCCCCCCAGACCAG 261702 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATG 27562 ||| | | || |||||||| ||||| | || |||| Sbjct 261701 CAGAGGTTGATCTTTGCTGGGAAGCAGTTGGAAGATG 261665 >seq8809 Length=77097 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 27429 TACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCAAATTTGAAGGC 27488 ||| || ||||| |||||| ||||| |||| | |||| || | |||| | ||||| Sbjct 57316 TACAGGGAAGACCATTACTTTTGAGATTGAACCCTTAGATACAATAGAAAATGTAAAGGC 57375 Query 27489 TAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATTTTTGCTGGTAA 27548 || || ||| | |||||||||||| ||| || ||||| | ||||| ||| ||| | Sbjct 57376 CAAGATCCAGCATAAGGAGGGAATTTCTCTTGATCAGCAAAGACTAATCTTTCCTGTCCA 57435 Query 27549 GCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAATCCACTCTTCA 27608 ||| || | |||| |||| | | |||| || | || |||| ||||||||||| Sbjct 57436 GCAGCTGCAAGATGGATGTACTTCATCTGACTGCAACATTCAGTAGGAGTCCACTCTTCA 57495 Query 27609 TCTAGTCTTGCGTCTT 27624 ||| || ||| | ||| Sbjct 57496 TCTTGTGTTGAGACTT 57511 >seq606 Length=304351 Score = 89.7 bits (98), Expect = 6e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| |||||||| ||||| || || |||||||| || || |||||||||||| | || Sbjct 110812 ATGCAGATCTTTGTGAAGACCCTGACAGGCAAGACCATCACCCTTGAGGTTGAGCCCAGT 110871 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGG 27509 || | || || ||| | || ||||||| || ||||||||||| Sbjct 110872 GACACCACTGAGAATGTCAAATCTAAAATCCAAGACAAGGAGGG 110915 >seq351 Length=365305 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 32125 ACCATTGTCAACCTTGCTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCA 32184 |||||| |||| | |||||||| ||||| ||| ||||| |||||| | | |||| Sbjct 266661 ACCATTATCAATTTGGCTCAGAATTTTGTGGGTAGCAATAATCTGAACCTCTTGCAGCCC 266720 Query 32185 TCTGGACAGTTTGGGACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATC 32244 ||| |||||||| ||| |||| |||||||||||| |||| || | || |||||| Sbjct 266721 ATTGGTCAGTTTGGTACCAGGCTGCATGGTGGCAAGGATTCTGCTAGTCCTCGATACATC 266780 Query 32245 TTCAC 32249 ||||| Sbjct 266781 TTCAC 266785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569649039544640