Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq12380 105 9e-18 >seq12380 Length=54645 Score = 105 bits (116), Expect = 9e-18 Identities = 244/360 (68%), Gaps = 12/360 (3%) Strand=Plus/Minus Query 13683 GAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAAGATCGAGATGTTC 13742 ||||||| |||||||| || || || || || ||| | || ||||| || || ||||| Sbjct 12146 GAAGAGGCAGAGTTTCCAATAGCATATTCTATAGTGGTTCATCACAAAATTGAAATGTTT 12087 Query 13743 GAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGTCCACGTGGACTCC 13802 || | ||||||||||||||||| || ||||| |||| ||| | ||||||||| Sbjct 12086 GACAGGCTCCTGAGGGCCATCTATATGCCTCAGAATTTCTATTGCATTCACGTGGACAAA 12027 Query 13803 AAGTCCGGCGACGAGTTCATCCGGG--GC-GTCTCGGCCATCGCCAGGTGCTTCCCTAAC 13859 || || || || | | || || || || | ||| || || ||| |||| Sbjct 12026 AAATC---AGAGGATTCCTTCTTGGCTGCAGTGATTGGCATTGCATCCTGTTTCAGTAAC 11970 Query 13860 GTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTCGCGTGCAGGCC 13919 || || || | |||| | |||||||||| || |||||||| || ||||| Sbjct 11969 GTCTTTGTGACCAGTCAGCTGGAGAGTGTGGTGTACGCATCATGGAGTCGGGTCCAGGCT 11910 Query 13920 GACCTCAGCTGCATGTCGGACCTGGA-CGCCTCCCCCGT-CA-AGTGGAGGTACCTGCTC 13976 ||||||| ||| ||| |||||| | | | || || | |||| |||| || || Sbjct 11909 GACCTCAACTGTATGCAGGACCTCTATAGAAT---GAGTGCAGACTGGAAGTACTTGATC 11853 Query 13977 AACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGGCGCTGAAG 14036 || || ||||| ||||| || || | || ||||||||||| || || || ||| ||| Sbjct 11852 AATCTTTGCGGTATGGATTTTCCTATTAAAACCAACCTGGAAATTGTCAGGAAGCTCAAG 11793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657975293086720