Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028461.1 Length=127011 Score E Sequences producing significant alignments: (Bits) Value seq8719 143 2e-29 >seq8719 Length=77844 Score = 143 bits (158), Expect = 2e-29 Identities = 130/164 (79%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 29942 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 30001 || || |||| ||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 22558 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 22499 Query 30002 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 30061 || || || ||||||||||| ||||||||||| ||||| || || ||||| || | | Sbjct 22498 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 22439 Query 30062 ACGTAAAACTGACACATGGCGTGGCACGGAGGAAGAGCCATGAG 30105 ||||| ||||| || | ||| ||||| ||||| || |||||||| Sbjct 22438 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATGAG 22395 Score = 89.7 bits (98), Expect = 4e-13 Identities = 118/161 (73%), Gaps = 2/161 (1%) Strand=Plus/Minus Query 30231 TGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTT 30290 |||| ||||| || || ||||||||||| || || || || || || | || || |||| Sbjct 19651 TGTATTCTGCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTT 19592 Query 30291 CCCT-GTGCTCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATC 30349 | || ||| ||| ||| ||||||| ||||||| ||| || ||||| ||||||||| Sbjct 19591 CTCTTGTGGA-GAACCCCAGGCTGTCCAAGAAGTCTCGGGATCCATTGGCATCCCAGATC 19533 Query 30350 TTTACCCCCTTCTCAGAGAGCTCTTTGGAGTTTGTGGACCC 30390 || || ||||| ||| || | |||| ||||| || || Sbjct 19532 TTCACTCCCTTGGAAGACAGTTTGTTGGCATTTGTAGATCC 19492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405851001591024