Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028699.1 Length=40740 Score E Sequences producing significant alignments: (Bits) Value seq55783 250 6e-62 seq71794 158 3e-34 seq86214 152 1e-32 seq71091 127 5e-25 seq80897 109 1e-19 >seq55783 Length=466 Score = 250 bits (276), Expect = 6e-62 Identities = 330/458 (72%), Gaps = 0/458 (0%) Strand=Plus/Plus Query 6161 GAGCTGGAGCGACTCGACCAGGGGCTGAATCTGCCACTGGTGGGTTATACCTGGACACGT 6220 || ||||| || || || ||| | || ||||||||||| ||||||| || || Sbjct 1 GAACTGGAACGTCTTGATCAGACTATCAACCTGCCACTGGTTCAGTATACCTACACCCGG 60 Query 6221 GATATCCAGTTGCGCGAAGACGTCTCTATCGCAGATGACATTTCCAGCTGGACGAATACC 6280 ||||| ||||| || ||||| || |||||||||||||| |||||||| | || |||| Sbjct 61 GATATTCAGTTCCGTGAAGATGTTTCTATCGCAGATGATATTTCCAGTTTTACCCGTACC 120 Query 6281 AGTTTTGGCGTGGCGGGTTCTGGCGCTAATCCGAATGGTAAAAACTGGGTAGGCAAAGAT 6340 |||||| | ||||| || || ||||||||||||||||||||||||||||||||| Sbjct 121 GGTTTTGCGGCAGCGGGATCCGGTGCTAATCCGAATGGTAAAAACTGGGTAGGCAAAACA 180 Query 6341 TCAACTGCCATTGCTGGCGTTAATGTTGATATCAGTAAAGACGGCAATCCGCTGAACCTT 6400 || || || | || || | ||||| |||||| ||||| || ||| ||| | | Sbjct 181 TCCACAGCACTGGCGGGTATCAATGTGGATATCCAGAAAGAGGGGTTTCCTCTGCAGTTA 240 Query 6401 TGGGGGATGGAGCTGGGATGGACTGTTGTTGAGCTGGCTGCGGCACAGCAGGTAGGCCGT 6460 ||||| |||||||| || |||||| ||||||| | || ||||||||||| || || Sbjct 241 TGGGGAATGGAGCTCGGCTGGACTATTGTTGAATTACAGGCCGCACAGCAGGTTGGTCGC 300 Query 6461 CCGATCGACACTCAGAAGTACGACGGGATGCAGCTTAAATGGCAGATGGATAACGACGAA 6520 || ||||| | || || | ||||| ||| ||| |||||| | |||||| || || Sbjct 301 CCTATCGATTCGCAAAAACATGACGGTATGACGCTGAAATGGAATATGGATGCGGATGAG 360 Query 6521 CAGGTTTACGTCGGAGACGAAGCGCTTGGTTTGAAAGGTCTGACGAATCTCGTTGGTGTG 6580 ||||| || |||| || || | || || | ||||||||| ||| | | | ||| Sbjct 361 CAGGTGTATATCGGCGATGACGGTCTGGGGGTAAAAGGTCTGCTGAACTTTGACAGCGTG 420 Query 6581 ACGCTGAACAACGCAACGAAGACCTGGGCTAACTCCAC 6618 || ||||| || || ||||| | |||||| | || || Sbjct 421 ACTCTGAATAATGCCGCGAAGCCGTGGGCTCAGTCTAC 458 >seq71794 Length=267 Score = 158 bits (174), Expect = 3e-34 Identities = 192/262 (73%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 6696 CTGATCTGCGCATTCCGCCAGAGCAGTATTCATTGCTGGCGAGCCGTAAGGTTTCCGAAG 6755 ||||||| | | ||||| ||||||| | ||||| | | | || || || | Sbjct 262 CTGATCTTCTGCTGCCGCCTGAGCAGTTTGCATTGTTATCATCCACTATCGTGTCGAGTG 203 Query 6756 CGGGTAACCAGTCACTGCTGACCTATCTGGCTGTGAACACTATCGCTTTCCACCAGAACG 6815 | |||||||||||| | ||||| || ||| |||||| ||||| | |||||||| | Sbjct 202 CCGGTAACCAGTCATTACTGACTTACCTGCAGACGAACACCATCGCATATCACCAGAATG 143 Query 6816 GCGTTCCGCTGGAAATCAAAGCGGTAAAATGGCTGAAAGGGCGCGGGGTTGGCGGTAAAG 6875 | | |||||| | ||| || || || ||||||||||| ||||| |||| ||||||| Sbjct 142 GTATGCCGCTGAACATCCGTGCAGTTAAGTGGCTGAAAGGTCGCGGTATTGGTGGTAAAG 83 Query 6876 ACCGTATGGTCGCCTACACCAACGATAAGAAATACGTCCGCTATCCACTGGTTCCGCTGC 6935 | || ||| | || |||||||| ||||| || |||||||||| || ||||||||||| | Sbjct 82 ATCGCATGATGGCTTACACCAATGATAAAAAGTACGTCCGCTTCCCGCTGGTTCCGCTTC 23 Query 6936 AAAGCGTTCCTGTTCAGTATCG 6957 | ||| |||| || ||||| || Sbjct 22 AGAGCATTCCGGTGCAGTACCG 1 >seq86214 Length=214 Score = 152 bits (168), Expect = 1e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 2801 ATCCCCGCCTGGCGTATTCACCATAGCCGCCTGATTCGCTTCGATGGGGTGACGCTGCCA 2860 || || || ||||| |||| || ||||||||||| ||| ||||||| ||||| |||| Sbjct 212 ATTCCGGCGTGGCGGGTTCATCACAGCCGCCTGATCCGCCTCGATGGTGTGACATTGCCG 153 Query 2861 TTCCAGCAGAAGATGACCGAGAACGAATGGGGAATGTCGGTTGTAGAGCGTATCTGGGAT 2920 | ||||||| || | || ||||||||||||||||||||||| || || || | || Sbjct 152 TACCAGCAGTCGAAAGCAGAAAACGAATGGGGAATGTCGGTTGTTGAACGCATATTTGAC 93 Query 2921 CGGCTTACTGCGTTCGACAGCGCCACTGTCGGTGCGGCGCAGCTGGTCTACAAAGCGCAT 2980 || || || || || |||||| | | || |||||||| |||||||| ||||| || ||| Sbjct 92 CGCCTGACAGCATTTGACAGCACATCGGTGGGTGCGGCTCAGCTGGTGTACAAGGCACAT 33 Query 2981 CTGCGGACCTACAAAGT 2997 || || || |||||||| Sbjct 32 CTCCGTACATACAAAGT 16 >seq71091 Length=271 Score = 127 bits (140), Expect = 5e-25 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 2019 GGTATGGCCTACAACCCGGACGAAATTATCTCCATCAGCAGCACGATGGAGAGCAAAGAC 2078 || |||| ||| | || |||||||| || || ||||||||||| || ||| ||||||| Sbjct 4 GGGATGGATTACGATCCCGACGAAATCATTTCTATCAGCAGCACAATCAAGAACAAAGAC 63 Query 2079 AAACTCATCATCGAGCTTTCGCAGCCAACCTACTCCATTAACGGCGTGGGGAAAATCGTT 2138 ||||| | | ||||| || ||||| || | | | ||| || || |||||||| Sbjct 64 AAACTGGTTGTGGAGCTGTCACAGCCGACGTGGACTAAAAACTCTGTCGGCAAAATCGTC 123 Query 2139 GTGGATAAACAGCCTGACGGCACCAGGTCGCCGAACCTCGCCGACTCGGTGATGATCAGC 2198 | ||||||||||| ||||||| | ||| || ||||| || || |||||||||||| | Sbjct 124 ATTGATAAACAGCCGGACGGCATGAAGTCACCAAACCTAGCGGATGCGGTGATGATCAAC 183 Query 2199 TACGCGCCAATGAATTCAGCCCTCAACATCTGGGAACTGCTAGGGAGA 2246 || || || ||| | | |||| | ||||||| | | || || ||| Sbjct 184 TATGCCCCGATGGAAGATGACCTCGATATCTGGGGATTACTGGGCAGA 231 >seq80897 Length=229 Score = 109 bits (120), Expect = 1e-19 Identities = 138/190 (73%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 3091 AGGCATGACGCTAATGGATGCCAAGGATACCTTCGAAACCCACCAGTACAGTTTCAGCGG 3150 ||| |||||||| |||||| | | ||| || ||||| ||| || |||||||| Sbjct 1 AGGGATGACGCTGATGGATACTGATGATGAGTTTGAAACTCACTCATATTCATTCAGCGG 60 Query 3151 TCTGGATGACATTCTTTCGCAGTTCGCCGAGCAGATTAGCGGTGCTGTTGGCATTCCACT 3210 || ||| || | || | | ||| || |||||||| |||||||| || ||||| || Sbjct 61 ACTTGATAACGTGCTGGCACGGTTTGCTGAGCAGATAAGCGGTGCGACCGGTATTCCGCT 120 Query 3211 GGTGCGCCTGTTCGGGCAGTCCCCTAAAGGTTTCTCAACGGGTGACGCAGACCTTGCCAA 3270 ||| ||||||||||| ||||| || ||| || || ||||| || |||||| |||| Sbjct 121 GGTCCGCCTGTTCGGTCAGTCTCCGTCAGGGTTTAATACCGGTGATGCTGACCTTTCCAA 180 Query 3271 CTATTATGAC 3280 |||||| ||| Sbjct 181 CTATTACGAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130102911774128