Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_028959.1 Length=52261 Score E Sequences producing significant alignments: (Bits) Value seq57556 89.7 2e-13 >seq57556 Length=433 Score = 89.7 bits (98), Expect = 2e-13 Identities = 223/333 (67%), Gaps = 17/333 (5%) Strand=Plus/Minus Query 35143 TTACAACAACCAAAAGTACTGTTTGCTGATTCGGTAGCATCTTCTGACAATTCAATCCTA 35202 ||| ||| | ||||| || ||| ||||| | ||| || |||| ||||||| || Sbjct 355 TTAGAACCAGCAAAAATA---TTTACTGATGCAGTAACAGGAACTGAAGATTCAATTCTT 299 Query 35203 ATTGGAGAATTAGCAAAATTGCTTAGACAAAATGGAATTGATACAGGACAAAATAGATTA 35262 || |||||||||||| | | | ||||| ||| |||||| |||| |||| ||| || Sbjct 298 ATAAGAGAATTAGCAACTATATTAAATCAAAAAGGAGTTGATATAGGAGAAAAGAGACTA 239 Query 35263 TTTGACTGGTTAAGAAATAATGGTTACTTAATAAAACGTAAAGGTGAGGATTACAATACA 35322 || | ||| | || | ||||| || ||||| ||| | | ||| ||| | || | Sbjct 238 TTCAAATGGATGAGGGAAAATGGGTATTTAATCAAAAGAGATGGTATAGATAAGAACTTA 179 Query 35323 CCAACTCAAAAAAGTGTAGATTTAGGAGTTATAGAAACAAAAGAAGGTACAAGAGTACAT 35382 || ||||||||| | ||| | | | || ||||| | ||| || |||| | || Sbjct 178 CCTACTCAAAAATCCATGGATCTTAAATTAATGGAAACTAGGGAATCTATAAGA-CAGAT 120 Query 35383 -CCAGATGGTCAT--ACAAGTATTACTAAA-ACACCTAAGATTACTGGTAAGGGACAAAT 35438 ||| |||||| || | |||| ||| ||| | | ||||| || || || ||||| Sbjct 119 ACCA---GGTCATGAACCAAAGTTACAAAAGACAACAAGAATTACCGGAAAAGGTCAAAT 63 Query 35439 ATACTTTATTAATAAGTT------TAAAAAGAA 35465 || || |||||||| || ||||||||| Sbjct 62 TTATTTCATTAATAAATTCTTAGGTAAAAAGAA 30 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 166929496378072