Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_029048.1 Length=131326 Score E Sequences producing significant alignments: (Bits) Value seq17593 100 2e-16 >seq17593 Length=34368 Score = 100 bits (110), Expect = 2e-16 Identities = 156/221 (71%), Gaps = 4/221 (2%) Strand=Plus/Plus Query 89768 AGTTCACACCTTCTTTCACTTTCCAGATTTGAATTGGGAAAATTGGTGTTTCTCCATT-- 89825 |||| || || ||||| | ||| ||||||| || || || | ||| ||| || || Sbjct 1420 AGTT-ACTCCATCTTTTATTTTAAAGATTTGTATAGGAAATACAGGTACTTCACCTTTAG 1478 Query 89826 -TCCGACTCCTTCATAAGTAGATTTTAGTATTTCTCTTATTATACATCTACCTTCTGCTG 89884 ||| | ||||| ||||||| | | ||| || | ||| |||||| | | Sbjct 1479 CTCCTAAGCCTTCTATTGTAGATTGCATAAGCTCTTCCATAACCATTCTTCCTTCTTCAG 1538 Query 89885 AAGTATCTGTACCATAATTTATAGAACTAAACACGACCTGATTTCCACCCCTTGAATGAA 89944 |||||||||||||||| |||||||| ||||| || || ||||| ||||| || || || | Sbjct 1539 AAGTATCTGTACCATAGTTTATAGAGCTAAATACTACTTGATTACCACCTCTAGAGTGCA 1598 Query 89945 TTGTGTTCATATTATGTATAAATGACTCCATTGATTGATGA 89985 ||||||| | || ||||| || |||||| | ||| ||| Sbjct 1599 TTGTGTTTAGGTTGTGTATGAAGCCCTCCATAGCTTGGTGA 1639 Score = 91.5 bits (100), Expect = 1e-13 Identities = 187/276 (68%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 89470 TTAGCTTCATTATTTGGATATTTTTCTTTAGCCTCTAATGCCATTTTTACTAAATTAAGA 89529 ||||||||||| || || | |||| ||||| || | || | | | | ||| | Sbjct 1064 TTAGCTTCATT-TTCGGCTGCTTTT--TTAGCTTCAATAGCTAGTCTAGGCATATTTAAT 1120 Query 89530 GTCGTAAAAGATAGATTTCCTCTTCCTATACTTGTTTTTTCTCCATGCAAATCTTCAAAT 89589 || ||||| || || ||||| | ||||| | || ||||| ||||||||||||||| || Sbjct 1121 GTTGTAAATGAAAGGTTTCCACGTCCTAAAGAGGTCTTTTCACCATGCAAATCTTCATAT 1180 Query 89590 ACCCTTGTACGACACCCCATTGTTGCTACTTCATAAATATATCTGTTTGGGTCGCACATT 89649 || | ||| | ||| ||||| || || | ||| | | ||||| || |||||| Sbjct 1181 ACTCGTGTTCTACAACCCATAGTAGCCAATTCGTTATGGTATCTCTTAGGGTCGTTAGCA 1240 Query 89650 TTCCATTTTACATGCTTATTGAAGGTTGCATCTAAATTTAAAAAATTAGGAAAAAATCTT 89709 | |||||| ||| ||||| ||| ||| |||||| | ||| || || |||| | Sbjct 1241 TCCCATTTCTCATTTTTATTAAAGCTTGTATCTAAGAACATAAAGTTTGGGAAAAGAGCT 1300 Query 89710 TTAGCTGATACTTTACATGCTAATTCATATAAGTCA 89745 |||| || | || ||| || | |||||| ||| Sbjct 1301 TTAGATGTTGTTTGACAAGCCTTTAAATATAAATCA 1336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419643389455004