Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq8719 141 8e-29 >seq8719 Length=77844 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||||| ||||| ||||| || || || ||||| |||| ||||| |||||||| | |||| Sbjct 22386 GATCTTCCTCTCATGGCCCTACCTCCATGCCATGCCCTTTGCCAGTTCTACGTGGTGAAT 22445 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || ||||||||||||||||| || || | || || |||||||| | || ||||| ||| Sbjct 22446 GGTGAGCTGTCCTGCCAGCTGTACCAGAGGTCAGGGGACATGGGCCTGGGTGTGCCCTTC 22505 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| || || || || |||||||| |||||||| || || Sbjct 22506 AACATCGCCAGCTATGCCCTGCTCACCTACATGATTGCACA 22546 Score = 141 bits (156), Expect = 8e-29 Identities = 128/161 (80%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| || || || || |||||||| ||||| || | ||| Sbjct 22546 TGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGCACACCCAGGCCC 22487 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 ||||| || || | || || ||||||||||||||||| |||||| | |||||||| ||| Sbjct 22486 ATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACCACGTAGAACTGG 22427 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || |||| ||||| || || || ||||| ||||| ||||| Sbjct 22426 CAAAGGGCATGGCATGGAGGTAGGGCCATGAGAGGAAGATC 22386 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 34302 CCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTCGAGACTTTC 34361 |||| | || || ||| ||| |||||||||||||| || | || || |||||||| Sbjct 19505 CCAACAAACTGTCTTCCAAGGGAGTGAAGATCTGGGATGCCAATGGATCCCGAGACTTCT 19564 Query 34362 TGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCTACGGGTTCC 34421 |||||| | ||||||| | | | || || || || || ||||| || || || || | Sbjct 19565 TGGACAGCCTGGGGTTCTCCACAAGAGAAGAAGGGGATTTAGGCCCAGTTTATGGCTTTC 19624 Query 34422 AGTGGAGACACTTTGGGGCGGAGTA 34446 ||||||| ||||||||||| || || Sbjct 19625 AGTGGAGGCACTTTGGGGCAGAATA 19649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 107/145 (74%), Gaps = 0/145 (0%) Strand=Plus/Minus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || ||||||||||| |||||||| || || || || ||||| || || || || || Sbjct 19649 TATTCTGCCCCAAAGTGCCTCCACTGAAAGCCATAAACTGGGCCTAAATCCCCTTCTTCT 19590 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 | | | ||||||| | |||||| |||||||| || || | || |||||||||||| Sbjct 19589 CTTGTGGAGAACCCCAGGCTGTCCAAGAAGTCTCGGGATCCATTGGCATCCCAGATCTTC 19530 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGG 7043 || ||| ||| || || | |||| Sbjct 19529 ACTCCCTTGGAAGACAGTTTGTTGG 19505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447742572507840