Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_029255.1 Length=129563 Score E Sequences producing significant alignments: (Bits) Value seq8864 178 1e-39 seq200 118 9e-22 seq8719 95.1 1e-14 seq18694 82.4 6e-11 >seq8864 Length=76667 Score = 178 bits (196), Expect = 1e-39 Identities = 193/256 (75%), Gaps = 0/256 (0%) Strand=Plus/Plus Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334 || || ||||| | ||||| || ||||| ||| | | || ||||| ||||||||| Sbjct 28070 CCCCACGAAGTCCTGATTGTGACGTGGCAGAAAATCAGGGCTGTGAGCCCGGAAAACATG 28129 Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394 | ||| || || || |||| |||||||| | ||||| || || | || || ||||| Sbjct 28130 GTCACCTTCAGCAAGAACCATGGGGTTGTGCTCCAGCCTGCCTATGAGGACAAGGTGAAC 28189 Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454 || || ||||| ||||| || ||| |||| || ||||||||||| || || |||||||| Sbjct 28190 ATCACCGAGCTGGGACTCCATAACTCAACCATTACCTTCTGGAATACCACCCTGGATGAT 28249 Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514 || ||||| |||||||| | || || || ||||| ||||||||||| |||||| ||| Sbjct 28250 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 28309 Query 1515 TGTCTAACCCTTTTTG 1530 || || ||||||| || Sbjct 28310 TGCCTCACCCTTTCTG 28325 >seq200 Length=430830 Score = 118 bits (130), Expect = 9e-22 Identities = 110/140 (79%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304 || || || ||||||||| | |||||||| ||||||||| | ||||| || ||||||||| Sbjct 414598 GTGGTGGAAGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 414539 Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364 || ||||| || ||||||||||| |||||||| | | || | |||| || ||||| Sbjct 414538 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAT 414479 Query 3365 ATTGCCGCGTGGATGACAGA 3384 || ||| ||||||||| || Sbjct 414478 ATCGCCCTGTGGATGACTGA 414459 >seq8719 Length=77844 Score = 95.1 bits (104), Expect = 1e-14 Identities = 118/162 (73%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593 || ||||| | ||| ||||||||||| || | || |||||||| | || || || Sbjct 22558 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 22499 Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653 |||||||| |||||||| |||| |||||||||| ||||| || ||||| || || | Sbjct 22498 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 22439 Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695 || || ||||| | | | || |||||||| || ||||| Sbjct 22438 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATG 22397 >seq18694 Length=30974 Score = 82.4 bits (90), Expect = 6e-11 Identities = 83/106 (78%), Gaps = 4/106 (4%) Strand=Plus/Plus Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320 ||||||||| | || |||||||| || ||||||||||| || ||||| | ||||| | Sbjct 24987 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCCCTTCC--TGAAAAGAATC 25044 Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAA 2366 | ||||| || |||||||| || | |||||||||||| | || || Sbjct 25045 GACCTTTAAAGAACAGAATTAACATAGTTCTCAGTAGAGAACTCAA 25090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414008168179408