Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_029255.1
Length=129563
Score E
Sequences producing significant alignments: (Bits) Value
seq8864 178 1e-39
seq200 118 9e-22
seq8719 95.1 1e-14
seq18694 82.4 6e-11
>seq8864
Length=76667
Score = 178 bits (196), Expect = 1e-39
Identities = 193/256 (75%), Gaps = 0/256 (0%)
Strand=Plus/Plus
Query 1275 CCACAAGAAGTTGTCATTGTAACATGGCAAAAAGTTAAAGCATCAAGCCCAGAAAACATG 1334
|| || ||||| | ||||| || ||||| ||| | | || ||||| |||||||||
Sbjct 28070 CCCCACGAAGTCCTGATTGTGACGTGGCAGAAAATCAGGGCTGTGAGCCCGGAAAACATG 28129
Query 1335 GCCACTTTTAGTAATGACCACGGGGTTGTTGTTCAGCCAGCATACAAAGATAAAATGAAC 1394
| ||| || || || |||| |||||||| | ||||| || || | || || |||||
Sbjct 28130 GTCACCTTCAGCAAGAACCATGGGGTTGTGCTCCAGCCTGCCTATGAGGACAAGGTGAAC 28189
Query 1395 ATAACTGAGCTTGGACTACAAAACACAACTATAACCTTCTGGAACACAACATTGGATGAT 1454
|| || ||||| ||||| || ||| |||| || ||||||||||| || || ||||||||
Sbjct 28190 ATCACCGAGCTGGGACTCCATAACTCAACCATTACCTTCTGGAATACCACCCTGGATGAT 28249
Query 1455 GAAGGGTGCTACAAGTGTTTATTTAACACTTTTGGATCTGGGAAGATGTCAGGAATAGGG 1514
|| ||||| |||||||| | || || || ||||| ||||||||||| |||||| |||
Sbjct 28250 GAGGGGTGTTACAAGTGCCTCTTCAATACCTTTGGTTCTGGGAAGATCTCAGGAGTAGCC 28309
Query 1515 TGTCTAACCCTTTTTG 1530
|| || ||||||| ||
Sbjct 28310 TGCCTCACCCTTTCTG 28325
>seq200
Length=430830
Score = 118 bits (130), Expect = 9e-22
Identities = 110/140 (79%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 3245 GTTGTTGATGAGCTCTTCCGAGATGGGGTAAACTGGGGGCGCATTGTTGCTTTCTTTGAG 3304
|| || || ||||||||| | |||||||| ||||||||| | ||||| || |||||||||
Sbjct 414598 GTGGTGGAAGAGCTCTTCAGGGATGGGGTGAACTGGGGGAGGATTGTGGCCTTCTTTGAG 414539
Query 3305 TTTGGTGGTGTTATGTGTGTGGAAAGCGTCAATAGAGGCATACCCTCCCTCGTTGACAAC 3364
|| ||||| || ||||||||||| |||||||| | | || | |||| || |||||
Sbjct 414538 TTCGGTGGGGTCATGTGTGTGGAGAGCGTCAACCGGGAGATGTCGCCCCTGGTGGACAAT 414479
Query 3365 ATTGCCGCGTGGATGACAGA 3384
|| ||| ||||||||| ||
Sbjct 414478 ATCGCCCTGTGGATGACTGA 414459
>seq8719
Length=77844
Score = 95.1 bits (104), Expect = 1e-14
Identities = 118/162 (73%), Gaps = 0/162 (0%)
Strand=Plus/Minus
Query 118534 AGCCCTGTCAGGTGAGCAATCATGTATGTCAACAAACTGTAGCTGGCTACATTAAAAGGA 118593
|| ||||| | ||| ||||||||||| || | || |||||||| | || || ||
Sbjct 22558 AGGCCTGTGATGTGTGCAATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 22499
Query 118594 ACACCCAGACCCATGTCTGCTGATCTCTGGTACAATTGGCAAGAGAGCTCCCCGTTTGCA 118653
|||||||| |||||||| |||| |||||||||| ||||| || ||||| || || |
Sbjct 22498 ACACCCAGGCCCATGTCCCCTGACCTCTGGTACAGCTGGCAGGACAGCTCACCATTCACC 22439
Query 118654 ACATAAAACTGACTTATGATGTGACATGGAGGCAGAACCATG 118695
|| || ||||| | | | || |||||||| || |||||
Sbjct 22438 ACGTAGAACTGGCAAAGGGCATGGCATGGAGGTAGGGCCATG 22397
>seq18694
Length=30974
Score = 82.4 bits (90), Expect = 6e-11
Identities = 83/106 (78%), Gaps = 4/106 (4%)
Strand=Plus/Plus
Query 2263 AAACAGAATGTTGTAATTATGGGAAGAAAGACATGGTTTTCACTTCCCATTAAAAGCA-- 2320
||||||||| | || |||||||| || ||||||||||| || ||||| | ||||| |
Sbjct 24987 AAACAGAATTTGGTGATTATGGGTAGGAAGACATGGTTCTCCCTTCC--TGAAAAGAATC 25044
Query 2321 GGCCTTTGAACAACAGAATAAATCTGGTTCTCAGTAGACACCTTAA 2366
| ||||| || |||||||| || | |||||||||||| | || ||
Sbjct 25045 GACCTTTAAAGAACAGAATTAACATAGTTCTCAGTAGAGAACTCAA 25090
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 414008168179408
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |