Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq4400 158 3e-33 seq7134 134 3e-26 seq66 122 2e-22 seq11706 120 7e-22 seq11308 105 2e-17 seq8809 100 7e-16 seq7041 96.9 8e-15 >seq4400 Length=129001 Score = 158 bits (174), Expect = 3e-33 Identities = 164/215 (76%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | || || | ||||| Sbjct 40108 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40049 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| ||||| | ||||| || ||| Sbjct 40048 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 39989 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||| || | || ||||| || ||||| ||| Sbjct 39988 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 39929 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || ||||| ||||| || || | ||||||||| Sbjct 39928 TTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTT 39894 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | || || | ||||| Sbjct 40336 AGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40277 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| ||||| | ||||| || ||| Sbjct 40276 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCCTTCTTTATCC 40217 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||| || | || ||||| || ||||| ||| Sbjct 40216 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 40157 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 40156 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 Score = 152 bits (168), Expect = 1e-31 Identities = 161/212 (76%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || ||||| || || |||||||| |||||||| ||||| | || || | ||||| Sbjct 40564 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40505 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| || ||||| || | || ||||| ||||| | ||||| || ||| Sbjct 40504 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCC 40445 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| |||||||| |||||||| || | || ||||| || ||||| ||| Sbjct 40444 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 40385 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || ||||| ||||| || || | |||||| Sbjct 40384 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 >seq7134 Length=91468 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||| | ||||||||||| |||||||| || || | || || | ||||||| Sbjct 87426 AGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 87367 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| || | || ||||| || || | || ||||| || Sbjct 87366 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCA 87307 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 87306 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 87247 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 87246 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | || || | || ||| Sbjct 86742 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86683 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || || | || |||||||| Sbjct 86682 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 86623 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 86622 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86563 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 86562 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || |||||||| || |||||||| || || | || || | || ||| Sbjct 86970 AGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86911 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 ||||||||||| || || ||||| | | || ||||| || || | || |||||||| Sbjct 86910 TCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 86851 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 86850 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86791 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 86790 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 131 bits (144), Expect = 4e-25 Identities = 156/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | || || | || ||| Sbjct 87198 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 87139 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| | | || ||||| || || | || |||||||| Sbjct 87138 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTCT 87079 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 87078 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 87019 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || | ||||| || || | |||||| Sbjct 87018 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 127 bits (140), Expect = 5e-24 Identities = 156/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||||||||| |||||||| || || | || || | || ||| Sbjct 86514 AGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTCT 86455 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||| || || || ||||| | | || ||||| || || | || || || || Sbjct 86454 TCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTCT 86395 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| |||||||||||| | || ||||| || ||||| ||| Sbjct 86394 TGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 86335 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || | || ||||| || | ||||||| Sbjct 86334 TTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 >seq66 Length=542294 Score = 122 bits (134), Expect = 2e-22 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| | ||||| ||||||| || |||||||| || || || || ||||||| Sbjct 261610 AGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATCT 261669 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| |||||| || || ||||| | | || ||||| || || | || ||||| || Sbjct 261670 TCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCT 261729 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || || || |||||||||||| | || ||||| || ||||| ||| Sbjct 261730 TGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 261789 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || || || || ||||| ||||| | |||||| Sbjct 261790 TTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 >seq11706 Length=58367 Score = 120 bits (132), Expect = 7e-22 Identities = 165/229 (72%), Gaps = 5/229 (2%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | | ||| |||| || ||||| ||||| ||||| || || | | || Sbjct 34770 ACAAAGTCTGAATATAAGATGAAAAGCAGACTCCTTTTGAATGTTGTAGTCAGACAAAGT 34711 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGT----TGGTCAGGAGGAA 211008 |||||||||||||| ||||| || ||||| || | | | || | |||||||| Sbjct 34710 ATGTCCATCTTCCAGCTAATTGCCAGCAAAGATCAGTCAGTCTTCACTGTTTAGGAGGAA 34651 Query 211009 CTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCT 211068 ||||||||| ||||| ||||| ||| || |||| | ||||| || |||||||| Sbjct 34650 TTCCTTCCTTATCCTGAATCTTGGTTTTTAC-ATTTCTGTTGTGTCCAAGGGTTCAACCT 34592 Query 211069 CGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 |||||||||| ||||| || || || || || | || | |||||| || Sbjct 34591 CGAGAGTGATGGTCTTCCCGGTAAGGGTTTTCATGAAAATCTGCATCTT 34543 >seq11308 Length=60846 Score = 105 bits (116), Expect = 2e-17 Identities = 108/139 (78%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 210907 CAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCA 210966 |||| |||||||||||||| ||||| ||||| || || | || | | ||||| ||||| Sbjct 52880 CAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCGGAAAAG-TATGTCCATTTTCCA 52822 Query 210967 GCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC--TTCCTTGTCCTG 211024 |||||||||| || ||||| || | ||| || |||||||||| ||| || ||| | ||| Sbjct 52821 GCTGCTTGCCAGCAAAGATCAGTCTTTGCTGATCAGGAGGAATTCCTTTTTCTTATTCTG 52762 Query 211025 GATCTTTTGTTTCACGTTT 211043 |||||| ||||| ||| Sbjct 52761 GATCTTGACCTTCACATTT 52743 >seq8809 Length=77097 Score = 100 bits (110), Expect = 7e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 || |||||| | ||||| |||||||||||||| | || ||||| | || | || Sbjct 57514 ACAAAGTCTCAACACAAGATGAAGAGTGGACTCCTACTGAATGTTGCAGTCAGATGAAGT 57455 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||| |||||||| | | | ||||| || | ||| || ||| ||| || ||| Sbjct 57454 ACATCCATCTTGCAGCTGCTGGACAGGAAAGATTAGTCTTTGCTGATCAAGAGAAATTCC 57395 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||||| | ||||||||| || || ||||| || || || || ||||| ||| | Sbjct 57394 CTCCTTATGCTGGATCTTGGCCTTTACATTTTCTATTGTATCTAAGGGTTCAATCTCAAA 57335 Query 211073 AGTGATCGTCTTTCCCGT 211090 ||| || ||||| || || Sbjct 57334 AGTAATGGTCTTCCCTGT 57317 >seq7041 Length=99228 Score = 96.9 bits (106), Expect = 8e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || || | ||| || ||||||| || || || | || || | || || | ||||| Sbjct 76594 AGCACCAAGTGCAGGGTGGACTTTTCCTGAATCCTGTAGTCTGAGAGAGTGCGGCCATCC 76535 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 || | | | |||||||| || || || | || | |||||| || | ||||||||||| Sbjct 76534 TCTATCCGTTTGCCTGCAAAAATCAGACACTGCTAGTCAGGTGGGATGCCTTCCTTGTCT 76475 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCA--GAGCTTTCAACCTCGAGAGTGATCG 211080 ||||| || ||| || || || |||||||| |||||| |||||| || || || | Sbjct 76474 TGGATTTTAGATTTGACATTCTCAGTGGTGTCACTGAGCTT--AACCTCAAGGGTTATGG 76417 Query 211081 TCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 |||| || || || ||||| ||| | | |||||| Sbjct 76416 TCTTGCCTGTCAGGGTCTTCACAGAGATCTGCAT 76383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1157774184117780