Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq7134 132 1e-25 seq8247 109 1e-18 seq18284 104 6e-17 seq15764 104 6e-17 seq25153 100 7e-16 seq66 100 7e-16 seq451 93.3 1e-13 seq5684 86.0 1e-11 seq1066 86.0 1e-11 seq12751 84.2 5e-11 >seq7134 Length=91468 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || ||| | || || Sbjct 86743 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86684 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 86683 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86624 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 86623 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86564 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 86563 CTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| || || |||| ||||| || | || ||| | || || Sbjct 86971 CAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86912 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||||||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 86911 TTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 86852 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 86851 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86792 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 86791 CTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 132 bits (146), Expect = 1e-25 Identities = 157/213 (74%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| || | || ||| | || || Sbjct 87199 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 87140 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || |||||||| Sbjct 87139 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTGTC 87080 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| ||| ||||||||||| || ||||| || | ||||| || Sbjct 87079 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 87020 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||| || ||||| || || | ||| | ||||| Sbjct 87019 CTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 129 bits (142), Expect = 1e-24 Identities = 157/214 (73%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 225501 CAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATC 225560 |||||| ||||| || ||||| ||||| |||| ||||| || | || ||| | || || Sbjct 86515 CAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGGCCGTC 86456 Query 225561 TTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTC 225620 ||| ||||| ||||| || ||||| | | || ||||| || || || || || || || Sbjct 86455 TTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCTTTTTC 86396 Query 225621 TTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGT 225680 ||||||||| ||| || ||||||||||| || ||||| || | ||||| || Sbjct 86395 TTGGATCTTCCCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGT 86336 Query 225681 CTTGCCCGTCAAAGTTTTTATGAACACTTGCATT 225714 ||| || ||||| ||||||| ||| | |||||| Sbjct 86335 CTTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 Score = 125 bits (138), Expect = 2e-23 Identities = 155/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | ||||| ||||| |||| ||||| || | || ||| | |||||| Sbjct 87426 AGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATCT 87367 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || ||||||||||| || ||||| || | || ||||| || || || || ||||| || Sbjct 87366 TCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCA 87307 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 87306 TGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 87247 Query 225682 TTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 || || ||||| || || | ||| | ||||| Sbjct 87246 TTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 >seq8247 Length=187595 Score = 109 bits (120), Expect = 1e-18 Identities = 87/105 (83%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4470 GAATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACC 4529 |||||| || ||||||||||| || || ||||||||||| ||||| |||||||||||||| Sbjct 157056 GAATATCTGTCCATCAGTAATCGAAATTACATTTGTAGGAATATATGCAGAAACATCACC 157115 Query 4530 TGCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACC 4574 | || ||||||| || ||| | ||||| | |||||||||||| Sbjct 157116 AGACTGAGTTTCGATAATAGGAAGAGCTGTCAATGATCCACCACC 157160 >seq18284 Length=59864 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||||||||||||||||||||| ||||||| | ||||||||| ||||| Sbjct 12852 ATACTTCAGGATGACCAAAAAATCAGAATAAGTGTTGATGTAAGATAGGATCCCCTCCTT 12793 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | || ||||||||| | ||||| | ||| | ||| ||||||| Sbjct 12792 CGGCAGGGTCAAAAAAGGTTGTATTTAGATTGCGATCTGTTAAAA 12748 >seq15764 Length=40281 Score = 104 bits (114), Expect = 6e-17 Identities = 86/105 (82%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||||||||||||||| ||||||||||| |||||||| | ||||||||| ||||| | Sbjct 17121 ATACTTCAGGATGACCAAAGAATCAGAATAAGTGTTGATATAAGATAGGATCCCCTCCTC 17062 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | ||| |||||||| | ||||| | ||| | ||| ||||||| Sbjct 17061 GGGCTGGGTCAAAAAAAGTTGTATTTAGATTGCGATCTGTTAAAA 17017 >seq25153 Length=15475 Score = 100 bits (110), Expect = 7e-16 Identities = 84/103 (82%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| |||||||||||||||||||||||| || |||||||| | ||||||||| ||| | | Sbjct 4533 ATACTTCAGGATGACCAAAAAATCAGAACAAGTGTTGATATAAGATAGGATCTCCTTCTC 4474 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 | | || ||||||||| | ||||| | ||| | ||| ||||| Sbjct 4473 CAGCAGGGTCAAAAAAGGTTGTATTTATATTGCGATCTGTTAA 4431 >seq66 Length=542294 Score = 100 bits (110), Expect = 7e-16 Identities = 136/190 (72%), Gaps = 0/190 (0%) Strand=Plus/Plus Query 225502 AGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTTCTCCCATCT 225561 ||||| | ||| | ||||| | || |||| ||||| || || ||| |||||| Sbjct 261610 AGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATCT 261669 Query 225562 TCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCTTCCTTGTCT 225621 || | |||||||||||| ||||| | | || ||||| || || || || ||||| ||| Sbjct 261670 TCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATCT 261729 Query 225622 TGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAACGTGATCGTC 225681 |||||||| ||| ||| ||||||||||| || ||||| || | ||||| ||| Sbjct 261730 TGGATCTTGGCCTTGACATTGTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTC 261789 Query 225682 TTGCCCGTCA 225691 || || |||| Sbjct 261790 TTACCGGTCA 261799 >seq451 Length=337024 Score = 93.3 bits (102), Expect = 1e-13 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 7552 CAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTATG 7611 ||| |||| || || ||| | || | ||||| || || ||||| || | || ||| Sbjct 115518 CAAATTTATAAGGTAATTGTCACCACACATGCATTC---ATAATTTTTTTCATAGTGATG 115462 Query 7612 CCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGAT 7671 || |||| || || || || ||||||||| | || || ||||| ||||||||||||||| Sbjct 115461 CCAATTATAATTGGAGGATTTGGAAATTGACTAGTGCCCTTAATAATTGGTGCTCCTGAT 115402 Query 7672 ATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACCGCCTTC 7721 || || ||||| | || ||||||| |||||| |||| || || || Sbjct 115401 ATAGCATTTCCTCATATAAATAATATAAACTTTTGACTACTTCCCCCCTC 115352 >seq5684 Length=108592 Score = 86.0 bits (94), Expect = 1e-11 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| |||||||||||||||| ||||| || ||||||||||| ||||| | Sbjct 58362 ATACTTCGGGATGCCCAAAAAATCAGAATAGGTGTTGGTATAGGATAGGATCTCCTCCTC 58303 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAA 370772 | | || |||| |||| | || || | ||| | ||| || |||| Sbjct 58302 CGGCAGGGTCAAGAAAGGTCGTGTTTAGATTGCAATCTGTCAAAA 58258 >seq1066 Length=252923 Score = 86.0 bits (94), Expect = 1e-11 Identities = 80/102 (78%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 4477 TGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCTGCTTGT 4536 || |||||||| || || || ||||| || || || |||||||| ||||| || |||||| Sbjct 80120 TGTCCATCAGTGATGGAAATGACATTCGTTGGAATGTAAGCAGACACATCGCCAGCTTGT 80061 Query 4537 GTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAA 4578 ||||| | || ||||| || || | || |||||||||||| Sbjct 80060 GTTTCTATGACTGGTAAAGCAGTCAAGGAGCCACCACCAAAA 80019 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 5017 CACTTCAATACCTTGCCCCATACACAGGTTGTGTTATAGGAGAATATTTTAGAGATAATG 5076 ||||||| || || || || || | || ||| ||| |||||||||||||| ||||||| Sbjct 79688 CACTTCAGTATCTGGCTCCTTATTCTGGCTGTTCTATGGGAGAATATTTTAGGGATAATG 79747 Query 5077 GTAAACATGCTTTAATCATCTACGATGATTTAAGTAAACAATTCAA 5122 | || |||||||| |||||||| || || ||| ||||| |||| Sbjct 79748 GCAAGCATGCTTTGATCATCTATGACGACTTATCCAAACAGGTCAA 79793 >seq12751 Length=52855 Score = 84.2 bits (92), Expect = 5e-11 Identities = 73/91 (80%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 370668 ATAATTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGC 370727 ||| ||| ||||| |||||||||||||| | |||||| || |||||||| || ||||| | Sbjct 4536 ATACTTCGGGATGCCCAAAAAATCAGAAGAGATGTTGGTATAGGATAGGGTCTCCTCCTC 4477 Query 370728 CTGATGGATCAAAAAAGCTAGTATTAAAATT 370758 | | |||||||||||| | || || | ||| Sbjct 4476 CAGCAGGATCAAAAAAGGTCGTGTTTAGATT 4446 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1191113708223768