Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq20608 251 6e-62 seq1625 98.7 8e-16 >seq20608 Length=25523 Score = 251 bits (278), Expect = 6e-62 Identities = 413/589 (70%), Gaps = 11/589 (2%) Strand=Plus/Plus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAAT 4607 || ||||| ||||| || ||||||| ||||||||||| ||||| || ||||| || | Sbjct 9200 CAGGCAAAGTCACAGTGTAAACCTTTATCTCTGCTAATAAGTTCATTGGAAAATGTGAGA 9259 Query 4608 CCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAAT 4667 || |||| | ||| || || ||||| ||||| | ||||| || ||||||||||| Sbjct 9260 CCAGGCACGAGTCCTTGATTCTTGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAG 9319 Query 4668 ATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACG-AGCTGGCTTTGTCTTT 4726 || ||||| || | ||||| ||||| | || || | | ||| |||||||| Sbjct 9320 ATTCCTTCCACCGTAGCAAAGGCTACCACACGTTCTCCACAGGTAGCCT-CTTTGTCTCC 9378 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| || ||||| | || || ||||| || | || || | | || || || Sbjct 9379 AATCCAAGGCAAAGCCCAATCTGCCTTCTTCTTTACACGAGGCATCATCTCAATGGCATT 9438 Query 4787 AAATA---ATTTACTTTTTTCAAATGG-GTCTTGAATATAAGTGTCTATTAGTAGGCTAT 4842 || | |||| |||| || ||| ||| | ||| |||||||| || || || ||| Sbjct 9439 GAAGAGAAATTTCCTTTCTT----TGGAGTCCTTAATGTAAGTGTCAATGAGGAGACTAA 9494 Query 4843 ACATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAAGCATCTAGCTTCTG 4902 ||||||||||| |||| ||||| || ||||| || || || || || || ||||||| Sbjct 9495 ACATTTCAGAACGTATGTTTTCCATGGCAATTTGGAAGCCATAGAAACAGAGGGCTTCTG 9554 Query 4903 TTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGG 4962 | | |||||||| | | ||| | || || |||||||| |||||||| || ||||| | Sbjct 9555 TAATCTGAACTTCTTGGCTAAAACACTCCACCAAGTTTTCATTTACTATGCCATCACTTG 9614 Query 4963 CTGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCC 5022 |||||| || |||| ||||||||||||||| || || ||| ||| || || || Sbjct 9615 TTGCAAAGAAAGCCAGAACATGAGATATAAAATATCTCTCCTCAAGCTCTAGGGCTTCCC 9674 Query 5023 AGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTT 5082 |||| | | || |||| | | | || || ||| | | |||||| || || ||| || Sbjct 9675 AGTGCTGAATGTCCTTAGAGAGA-CCACCTCCTCAGCTGCCCAAAAGGAAGCCTCCATTT 9733 Query 5083 TTTTGTACATAGACCAAATATCAGGATACTGAATCGGAAGTATGACAAA 5131 | || ||||| |||||||||| | || | || ||| |||||||| Sbjct 9734 TCTTATACATCTGCCAAATATCATGGTATTCGATAAGAAAGATGACAAA 9782 >seq1625 Length=211188 Score = 98.7 bits (108), Expect = 8e-16 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 4572 TCGTCTCTGCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTA 4631 || ||||||||||| ||||| || ||||| || | || ||||| | |||| || || Sbjct 134440 TCATCTCTGCTAATAAGTTCATTGGAAAATGTGAGACCAGGCATGAGTCCTCGTTTCTTG 134499 Query 4632 AGCCAAAATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCT 4691 ||||| ||||| | ||||| || ||||||||||| || ||||| || |||||||| ||| Sbjct 134500 AGCCAGAATATCGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACCGCGGCAAAGGCT 134559 Query 4692 AC 4693 || Sbjct 134560 AC 134561 Score = 86.0 bits (94), Expect = 5e-12 Identities = 82/105 (78%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 4811 GTCTTGAATATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGC 4870 ||| | ||| |||||||| || || || |||||||||||||||||||| ||||| || || Sbjct 136423 GTCCTTAATGTAAGTGTCAATGAGGAGACTATACATTTCAGAATGTATGTTTTCCATGGC 136482 Query 4871 AATCTGAAATCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTC 4915 ||| || || || || || || | |||||||| | || ||||| Sbjct 136483 AATTTGGAAGCCATAGAAACAGCGGGCTTCTGTAATCTGCACTTC 136527 Score = 86.0 bits (94), Expect = 5e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 4931 TACTAAGTTTTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATAT 4990 ||| |||||||| |||||||| || ||||| |||||||| || |||| ||| |||||||| Sbjct 137142 TACCAAGTTTTCATTTACTATGCCATCACTTGCTGCAAAGAAAGCCAGAACGTGAGATAT 137201 Query 4991 AAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAG 5040 ||| || || |||||||| || || |||||| | | ||||||| Sbjct 137202 AAAATATCTCTCCTCAGGCTTCAGGGCTTCCCAGTGCTGAATGTCTTTAG 137251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426566752633076