Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11] 92,772 sequences; 2,204,732,179 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq7134 125 2e-23 seq4400 122 2e-22 seq66 89.7 1e-12 >seq7134 Length=91468 Score = 125 bits (138), Expect = 2e-23 Identities = 163/224 (73%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | ||| Sbjct 87207 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTG 87148 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 87147 CGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 87088 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 87087 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 87031 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 87030 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86987 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || ||||| || ||||||||||| || | | ||| Sbjct 86751 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTG 86692 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || |||||||| ||||| | |||||||||||| | | ||| || Sbjct 86691 CGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 86632 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 86631 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 86575 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 86574 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86531 Score = 116 bits (128), Expect = 9e-21 Identities = 161/224 (72%), Gaps = 6/224 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || ||||| || ||||||||||| || | | ||| Sbjct 86979 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAGAGTG 86920 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || |||||||| ||||| | |||||||||||| | | ||| || Sbjct 86919 CGGCCGTCTTCCAGCTGCTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 86860 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 ||||| ||||| || || |||||| |||| | | |||| ||| ||| || || Sbjct 86859 TCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCC 86803 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || || || | ||||||||||||| |||||| Sbjct 86802 AGGGTGATGGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 86759 Score = 116 bits (128), Expect = 9e-21 Identities = 156/216 (72%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | || | || |||||||| ||||||||||| || | | ||| | ||||| Sbjct 87427 GAGGACCAAGTGCAAGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTGCGTCCATC 87368 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| || |||||||| ||||| |||||||||||||| | | ||| || ||||| || Sbjct 87367 TTCCAGCTGCTTCCCGGCAAAGATCAGCCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 87308 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 || || || |||||| |||| | | |||| ||| ||| || || || || || Sbjct 87307 ATGGATCTTGGCCTTGACATTCTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGAT 87251 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || | ||||||||||||| |||||| Sbjct 87250 GGTCTTACCGGTCAAGGTCTTCACGAAGATCTGCAT 87215 Score = 114 bits (126), Expect = 3e-20 Identities = 161/225 (72%), Gaps = 6/225 (3%) Strand=Plus/Minus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 ||||| | ||||| || || || || |||||||| ||||||||||| || | | ||| Sbjct 86523 CTGAGACGCAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAGTCAGACAGAGTG 86464 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 | || ||||| || ||||||||| ||||| | |||||||||||| | | ||| || Sbjct 86463 CGGCCGTCTTCCAGCTGTTTCCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCC 86404 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCA 152060 || |||||||| || || ||||| |||| | | |||| ||| ||| || || Sbjct 86403 TCTTTTTCTTGGATCTTCCCCTTGACGTTCTCGATGGTGTC---ACTGGGCTCCACCTCC 86347 Query 152061 AGAGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATT 152105 || || || || || || || | || || ||||||| ||||||| Sbjct 86346 AGGGTGATGGTCTTACCGGTCAACGTTTTTACGAAGATCTGCATT 86302 >seq4400 Length=129001 Score = 122 bits (134), Expect = 2e-22 Identities = 162/225 (72%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || |||||||| |||||||||||||||| | ||| Sbjct 40118 CCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGT 40059 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 40058 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCC 39999 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || || |||| | | | || ||| || || || Sbjct 39998 TTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAG 39939 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 || || || ||||| ||||| ||||||||||||| ||||||||| Sbjct 39938 GGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTTT 39894 Score = 116 bits (128), Expect = 9e-21 Identities = 159/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 151883 CCTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGT 151942 ||| || | ||| || || || || || |||||||| |||||||||||||||| | ||| Sbjct 40346 CCTCAGACGGAGCACGAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGT 40287 Query 151943 TCTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCC 152002 | ||||| || || || || || ||||| |||||||||||||| | | ||| || Sbjct 40286 GCGGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCGGGAGGGATGCC 40227 Query 152003 TTCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAG 152062 ||| || || || || || || || |||| | | | || ||| || || || Sbjct 40226 TTCTTTATCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAG 40167 Query 152063 AGTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||| ||||||||||||| |||||| Sbjct 40166 GGTGATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40125 Score = 113 bits (124), Expect = 1e-19 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 151893 AGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCT 151952 || || || || || || |||||||| |||||||||||||||| | ||| | ||||| Sbjct 40564 AGCACCAGGTGCAGGGTCGACTCTTTCTGGATGTTGTAATCGGAGAGAGTGCGGCCATCC 40505 Query 151953 TCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCT 152012 || || || || || ||||| |||||||||||||| | | ||| ||||| || || Sbjct 40504 TCCAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCTGGAGGGATGCCTTCTTTATCC 40445 Query 152013 TGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTT 152072 || || || || || |||| | | | || ||| || || || || || || Sbjct 40444 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGCTGGGCTCCACCTCCAGGGTGATGGTC 40385 Query 152073 TTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||| ||||| ||||||||||||| |||||| Sbjct 40384 TTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 40353 >seq66 Length=542294 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/216 (69%), Gaps = 6/216 (3%) Strand=Plus/Plus Query 151892 GAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATC 151951 |||||| | |||| || |||| || ||||||||||| || | ||| ||||| Sbjct 261609 GAGGACCAAGTGAAAGGTGGACTTTTCCTGGATGTTGTAGTCAAACAGAGTGTGTCCATC 261668 Query 151952 TTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTC 152011 ||| | ||||| || ||||| | |||||||||||| | | ||| || ||||| || Sbjct 261669 TTCCAACTGCTTCCCAGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCCTCCTTATC 261728 Query 152012 TTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACT---CTCTACTTCAAGAGTAAT 152068 ||| || || |||||| | || | | |||| ||| ||| || || || || || Sbjct 261729 TTGGATCTTGGCCTTGACATTGTCGATGGTGTC---ACTGGGCTCCACCTCCAGGGTGAT 261785 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || || || |||||||| |||| |||||| Sbjct 261786 GGTCTTACCGGTCAGGGTCTTCACAAAGATCTGCAT 261821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1152449321002012