Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Manis_20pentadactyla_20[genbank_20GCA_5F000738955.1_202014-08-11]
92,772 sequences; 2,204,732,179 total letters
Query= NC_033176.1
Length=224064
Score E
Sequences producing significant alignments: (Bits) Value
seq1509 161 1e-34
seq7786 129 8e-25
>seq1509
Length=219255
Score = 161 bits (178), Expect = 1e-34
Identities = 173/229 (76%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 9256 GTCTGGAACAGTTGCTCGTCACTCCATTCTGGATGTTCTTGTTTCAGAACATCGCACACC 9315
|||||||| | ||||| || |||||||||||| |||||||| || ||||| || ||
Sbjct 162864 GTCTGGAATAACTGCTCATCGTCCCATTCTGGATGCTCTTGTTTAAGTACATCACATACT 162805
Query 9316 CTGTTGTGTTCCCTGAGCCAGATAGTGGCGTACATCATGAGCCCAGGTACCAGGCCAAAA 9375
||||| ||||||| ||||| || ||||| |||||||| || ||||| |||||||||||
Sbjct 162804 CTGTTATGTTCCCGAAGCCAAATTGTGGCATACATCATCAGACCAGGCACCAGGCCAAAG 162745
Query 9376 GCCTCTTGACCGACAGCCAGACGCATGTTTTCGGGCACTTCGGGAGGATAGATCATGTGC 9435
|||| || || ||||| | ||| | ||| || || | || || |||||||| |
Sbjct 162744 ACCTCCTGGCCCACAGCAAACTGCAGATGTTCAGGGACGTGAGGCGGGTAGATCATCTTG 162685
Query 9436 ACCTGGACGTCTTTGACCGAGGGGGGATACATTTCACCGTCAATCATCT 9484
||||| |||||||| | ||| |||||||| || || |||| ||||
Sbjct 162684 ACCTGAGTATCTTTGACTGTGGGAGGATACATCTCTCCATCAACTATCT 162636
Score = 141 bits (156), Expect = 1e-28
Identities = 225/323 (70%), Gaps = 0/323 (0%)
Strand=Plus/Minus
Query 8263 CTTGAGGAGCTCCTCATCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCT 8322
|||| ||||| || ||| |||| | ||| | | || ||||| ||||| || || |
Sbjct 164475 CTTGGTGAGCTGCTGATCTTGAACACTGAATGAAGTAAAAGGACAGCCCTTCACATTCTT 164416
Query 8323 ACAGACTAGAGACTGAATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAA 8382
|||| ||||||||||| | || |||| ||| || || || ||||| || ||
Sbjct 164415 GCAGATAAGAGACTGAATTGAGGCAGCGTTGATGATTTTAAAACCTACTTCTCCACCAAA 164356
Query 8383 GGTGCTGGGCTTCCAGTACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGA 8442
||||| |||||||||||| | || || || ||| || |||| || ||||| |||||
Sbjct 164355 AGTGCTAGGCTTCCAGTACTCAGGAGAACATATGGGATTACCCATAAGTCCTTTCAGGGA 164296
Query 8443 GAACGGAGCCCCCAACTCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTC 8502
||| || || || | || | ||| ||||||| || ||||| | || || ||||||||
Sbjct 164295 GAATGGTGCTCCAAGTTCTACCATGGTCTCACCAAAAATGGCATCTGGGCGAGGCTTTTC 164236
Query 8503 CACCAAGAATCCGGTGTACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTC 8562
||||| | | | |||||||||| || || | ||| || || || || | ||
Sbjct 164235 TACCAAAAGGGCAGGATACAGCTCCATGGCATCAATGTCACCATAGAGAGCTTCTAACTC 164176
Query 8563 GGCAGCGATCTCCTTTTCTCCTG 8585
||||| || ||||| |||||||
Sbjct 164175 CGCAGCCATTTCCTTCTCTCCTG 164153
Score = 123 bits (136), Expect = 4e-23
Identities = 121/156 (78%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 9649 TCTTACCCCATGTCCCAGTCCTTTAGTGAAGGCCGGGCCTCGCGCCAAATCAGTCCTAAA 9708
|||||||||||| ||||||||||| ||||| || || |||||| ||| ||| | ||
Sbjct 161698 TCTTACCCCATGGCCCAGTCCTTTGGTGAAAGCTGGTCCTCGCCTATGATCTGTCTTGAA 161639
Query 9709 AAACTGGTGCGTGAAATGTTGGCCAAAAAAGGCAAACATTAAGTTGGTGCCCTGGGGATC 9768
||| || || ||||| || ||| |||| || |||||||| | || ||||||||||||||
Sbjct 161638 AAATTGATGTGTGAAGTGCTGGGCAAAGAATGCAAACATCATATTTGTGCCCTGGGGATC 161579
Query 9769 GGGAGTGAAGGTCCTCCGAAGAAGAGTTTTTTCCAC 9804
|| |||| | |||| |||||| |||||||||
Sbjct 161578 AGGGATGAACTTTCTCCTTAGAAGAAATTTTTCCAC 161543
Score = 87.8 bits (96), Expect = 3e-12
Identities = 107/146 (73%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 9908 TCACCTTTGACCCCAACAGGAGTTGGACAATCGTGAGGAACCGGAGGTAGAATCCTTGCG 9967
|||||||| || || | || ||||| || | || || || ||||| ||| || |
Sbjct 161093 TCACCTTTCACACCCATGGGTGTTGGGCAGTTGTCAGCCACAGGAGGAAGAGCTCTGGTA 161034
Query 9968 TAATAGGAGAGATTGGAGAAAGCTTCCCAGCTTGGGTATTCGTAGTCCGCGTTGTATATG 10027
|||||||| ||||| || || |||||||||||| ||| | |||| || ||||| |
Sbjct 161033 TAATAGGAAAGATTAGAAAAGGCTTCCCAGCTTTTGTAGCCATAGTGTGCATTGTAAGTT 160974
Query 10028 GGAGGGCTGTCAATCAAATCGGATCT 10053
|| |||||| ||||||||| |||||
Sbjct 160973 GGTGGGCTGGCAATCAAATGTGATCT 160948
>seq7786
Length=85644
Score = 129 bits (142), Expect = 8e-25
Identities = 212/306 (69%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 8279 TCGGGAACTCGGAACGCGGCCAACGGACACCCCTTGACGTTGCTACAGACTAGAGACTGA 8338
||||| || ||||| | | | ||||| |||| |||| ||||| || ||
Sbjct 27161 TCGGGCACGCGGAAGGAAACGTAGGGACAGGTCTTGGTGTTGAGGCAGACCAGTTTCTTC 27102
Query 8339 ATAGTTGCGCTCTTGACGATCCCGAACCCCACGTCTCCGCCGAAGGTGCTGGGCTTCCAG 8398
| || ||| ||||||| || ||| |||| || || || || ||||| |||||||||
Sbjct 27101 AGCGTGGCGGTCTTGACAATGTTGAAGCCCATCTCGCCCCCAAATGTGCTCGGCTTCCAG 27042
Query 8399 TACCCCGGGGAGCAGATGACGTTCGCCATGAGGCCTTTGAGGGAGAACGGAGCCCCCAAC 8458
||| | || || |||||| |||| ||| |||||| |||||||| || || ||||| |
Sbjct 27041 TACTCTGGAGAACAGATGGGGTTCCCCAGGAGGCCCTTGAGGGAAAAGGGGGCCCCGATT 26982
Query 8459 TCGAGAATGCTCTCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTG 8518
|| | || ||||| || ||||||| ||| ||| || || || | | | || | |
Sbjct 26981 TCTATCATACTCTCCCCAAAGATGGAGTTCGGATGGCATTTCTCGAGAAGCAGCCCCGGG 26922
Query 8519 TACAGCTCCACAGCCTCGACGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATCTCCTTT 8578
|| | ||||| ||| || | |||||| || || || ||||| | || ||||||||
Sbjct 26921 TAGAACTCCAAAGCATCAATGTCTCCATATAGATCCTCCAGTTCAGTTGCCATCTCCTTC 26862
Query 8579 TCTCCT 8584
||||||
Sbjct 26861 TCTCCT 26856
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 716045473818880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |